NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39915.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39915.1 Public Mus musculus 7 Pop4 23 108 98 CCDS HistoryNCBI Gene:66161Re-query CCDS DB by CCDS ID:39915.1Re-query CCDS DB by GeneID:66161See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39915.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032585.7 ENSMUSP00000032585.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032585.7Link to Ensembl Protein Viewer:ENSMUSP00000032585.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032585Re-query CCDS DB by Protein ID:ENSMUSP00000032585
Original member NCBI NM_025390.4 NP_079666.1 Updated not alive Link to Nucleotide Sequence:NM_025390.4Link to Protein Sequence:NP_079666.1Re-query CCDS DB by Nucleotide ID:NM_025390Re-query CCDS DB by Protein ID:NP_079666
Current member NCBI NM_025390.5 NP_079666.1 Accepted alive Link to Nucleotide Sequence:NM_025390.5Link to Protein Sequence:NP_079666.1Re-query CCDS DB by Nucleotide ID:NM_025390Re-query CCDS DB by Protein ID:NP_079666Link to BLAST:NP_079666.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079666.1 221 Q9CR08 221 100% 0 0

Chromosomal Locations for CCDS 39915.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 38263173 38263309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38264328 38264429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38265900 38265961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38266127 38266204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38267369 38267595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38268902 38268954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38271147 38271153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGAAGGCTGCCATCTACCATGCCTTTTCTCATAAAGAAGCCAAGGACCACGATGTGCAGGAGCTGGGAA
GCCAGCGGGCTGAGGCCTTTGTGCGGGCCTTCCTGAAGCAGAGCATACCTCACATGAGCCAAGAAGACTG
TGAGAGCCATCTGCAGCGCAAGGCCGTGATCTTGGAATATTTCACTCGCCTAAAGCCAAGGCCAAGGCCA
AAGAAGAAATCCAAAGGCCTCTCTGCCAAACAGAGGAGAGACATGCGGCTCTTTGACATTAAACCAGAGC
AACAGAGATACAGCCTGTTCCTCCCTCTCCATGAACTCTGGAAACAGTACATCCGGGACCTGTGCAATGG
GCTCAAGCCGGACACGCAGCCACAGATGATTCAGGCCAAGCTCCTAAAGGCAGATCTTCATGGTGCTATT
ATTTCAGTCACGAAATCCAAGTGCCCCTCCTATGTGGGAGTTACAGGAATCCTTCTGCAGGAGACCAAAC
ATGTCTTTAAGATCATCACCAGAGAAGACCACCTAAAAGTCATCCCCAAGCTGAATTGTGTGTTCACCAT
AGAAATTGATGACTTCATTTCCTACATTTATGGAAGCAAATTCCAGCTTCGGGCAAGTGAGCGGTCTGCC
AAGAAGTTCAAAGCAAAGGGATCAATTGACCTGTGA

Translation (221 aa):
MKAAIYHAFSHKEAKDHDVQELGSQRAEAFVRAFLKQSIPHMSQEDCESHLQRKAVILEYFTRLKPRPRP
KKKSKGLSAKQRRDMRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADLHGAI
ISVTKSKCPSYVGVTGILLQETKHVFKIITREDHLKVIPKLNCVFTIEIDDFISYIYGSKFQLRASERSA
KKFKAKGSIDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH