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Report for CCDS39975.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39975.2 Public Mus musculus 7 Trpm1 23 108 98 CCDS HistoryNCBI Gene:17364Re-query CCDS DB by CCDS ID:39975.2Re-query CCDS DB by GeneID:17364See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 39975.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177102.7 ENSMUSP00000134947.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177102.7Link to Ensembl Protein Viewer:ENSMUSP00000134947.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000177102Re-query CCDS DB by Protein ID:ENSMUSP00000134947
Original member Current member NCBI NM_018752.3 NP_061222.3 Accepted alive Link to Nucleotide Sequence:NM_018752.3Link to Protein Sequence:NP_061222.3Re-query CCDS DB by Nucleotide ID:NM_018752Re-query CCDS DB by Protein ID:NP_061222Link to BLAST:NP_061222.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061222.3 542 Q2TV84-3 542 100% 0 0

Chromosomal Locations for CCDS 39975.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 64199356 64199358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64201887 64202100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64203006 64203130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64204422 64204593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64208276 64208450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64208869 64208992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64209957 64210029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64210838 64210938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64217490 64217660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64219108 64219242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64220242 64220292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64223691 64223975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGTACATCCGAGTCTCCTACGACACCAAGCCAGATTCCCTGCTCCACCTCATGGTGAAGGACTGGCAGC
TG
GAGCTCCCGAAGCTCTTGATATCTGTGCACGGAGGCCTCCAAAGCTTCGAGATGCAGCCCAAACTGAA
G
CAGGTGTTTGGGAAAGGTCTGATCAAGGCTGCCATGACCACGGGGGCGTGGATCTTCACCGGGGGTGTG
AGC
ACTGGTGTCGTCAGCCATGTGGGGGATGCCTTGAAAGACCACTCCTCCAAGTCCAGAGGCCGGCTCT
GT
GCTATAGGAATTGCTCCCTGGGGCATGGTGGAGAACAAGGAAGACCTGATTGGAAAAGATGTAACAAG
A
GTCTATCAGACCATGTCCAACCCTCTGAGCAAGCTCTCTGTGCTCAACAATTCCCACACTCACTTCATC
TTG
GCTGACAACGGCACCCTGGGCAAGTATGGTGCTGAGGTGAAGCTTCGAAGACAGCTGGAAAAACACA
TC
TCCCTGCAGAAGATCAACACAAGGCTGGGCCAGGGTGTACCTGTCGTGGGCCTAGTGGTAGAAGGTGG
T
CCTAACGTGGTTTCTATCGTCCTGGAGTATCTCAAAGAAGACCCTCCTGTCCCTGTGGTGGTTTGCGAT
GGC
AGTGGACGTGCCTCTGACATTTTGTCCTTCGCACACAAATACTGCGACGAAGGAGGAGTCATAAACG
AG
TCCCTGCGGGACCAGCTTCTAGTTACCATTCAGAAAACATTTAATTACAGCAAGTCCCAGTCGTATCA
G
CTGTTTGCAATTATCATGGAGTGCATGAAGAAGAAAGAACTCGTCACTGTGTTTCGGATGGGTTCCGAG
GGT
CAGCAAGATGTCGAGATGGCAATTTTAACTGCCTTGCTCAAAGGAACCAACGCATCAGCTCCAGATC
AG
CTGAGCTTGGCCCTGGCTTGGAACCGGGTCGACATAGCGCGAAGCCAGATCTTCGTCTTTGGCCCACA
C
TGGCCGCCACTGGGAAGCCTGGCCCCTCCTGTGGACACCAAAGCCACAGAGAAGGAAAAGAAGCCACCC
ACA
GCCACCACCAAGGGGAGAGGAAAAGGAAAAGGCAAGAAGAAAGGCAAAGTGAAAGAGGAAGTGGAGG
AA
GAGACGGACCCCCGGAAGCTTGAGCTGCTCAACTGGGTGAATGCCCTGGAGCAAGCCATGCTGGATGC
T
CTTGTCCTAGATCGGGTGGACTTTGTAAAGCTCCTGATTGAAAACGGAGTGAACATGCAGCATTTCCTC
ACC
ATCCCGAGGCTGGAGGAGCTATACAACACCAGACTGGGCCCACCAAACACCCTTCATCTGCTGGTGC
GG
GATGTAAAGAAGAGCAACCTTCCACCTGATTACCACATCAGCCTCATTGATATAGGACTGGTGCTGGA
G
TACCTCATGGGCGGTGCCTACCGCTGCAACTACACTCGGAAAAGCTTCCGGACTCTCTACAACAACTTG
TTT
GGCCCTAAGAGGGTAGAGCTCAGCAGACACACAGTGTCCTGTGCCTCCCAGAGTAACATGTGGTTCC
TT
GATGTGCTTCCCCAAAAGCCCACCTGTGCAGAATGCAACTCTTCACCTCACCTGTCCCAAACTGACAT
C
ACCCCACCTCTGCCCTGA


Translation (542 aa):
MYIRVSYDTKPDSLLHLMVKDWQLELPKLLISVHGGLQSFEMQPKLKQVFGKGLIKAAMTTGAWIFTGGV
S
T
GVVSHVGDALKDHSSKSRGRLCAIGIAPWGMVENKEDLIGKDVTRVYQTMSNPLSKLSVLNNSHTHFI
L
ADNGTLGKYGAEVKLRRQLEKHISLQKINT
RLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCD
G
SGRASDILSFAHKYCDEG
GVINESLRDQLLVTIQKTFNYSKSQSYQLFAIIMECMKKKELVTVFRMGSE
G
QQDVEMAILTALLK
GTNASAPDQLSLALAWNRVDIARSQIFVFGPHWPPLGSLAPPVDTKATEKEKKPP
T
ATTKGRGKGKGKKKGKVKEEVEEETDPRKLELLNW
VNALEQAMLDALVLDRVDFVKLLIENGVNMQHFL
T
IPRLEELYNT
RLGPPNTLHLLVRDVKKSNLPPDYHISLIDIGLVLEYLMGGAYRCNYTRKSFRTLYNNL
F
GPKRVELSRHTVSCASQSNMWFLDVLPQKPTCAECNSSPHLSQTDITPPLP




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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