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Report for CCDS39981.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39981.1 Public Mus musculus 7 Mef2a 23 108 98 CCDS HistoryNCBI Gene:17258Re-query CCDS DB by CCDS ID:39981.1Re-query CCDS DB by GeneID:17258See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39981.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156690.7 ENSMUSP00000117496.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156690.7Link to Ensembl Protein Viewer:ENSMUSP00000117496.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156690Re-query CCDS DB by Protein ID:ENSMUSP00000117496
Original member Current member EBI ENSMUST00000135493.7 ENSMUSP00000138566.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135493.7Link to Ensembl Protein Viewer:ENSMUSP00000138566.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135493Re-query CCDS DB by Protein ID:ENSMUSP00000138566
Original member Current member NCBI NM_001033713.2 NP_001028885.1 Accepted alive Link to Nucleotide Sequence:NM_001033713.2Link to Protein Sequence:NP_001028885.1Re-query CCDS DB by Nucleotide ID:NM_001033713Re-query CCDS DB by Protein ID:NP_001028885Link to BLAST:NP_001028885.1
Original member Current member NCBI NM_001357325.1 NP_001344254.1 Accepted alive Link to Nucleotide Sequence:NM_001357325.1Link to Protein Sequence:NP_001344254.1Re-query CCDS DB by Nucleotide ID:NM_001357325Re-query CCDS DB by Protein ID:NP_001344254Link to BLAST:NP_001344254.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028885.1 498 Q60929-1 498 100% 0 0
NP_001344254.1 498 Q60929-1 498 100% 0 0

Chromosomal Locations for CCDS 39981.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 67234868 67235228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67236524 67236650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67240314 67240440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67244521 67244544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67251657 67251844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67264865 67264924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67265943 67266162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67268269 67268400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67295375 67295578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67316792 67316845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGGGCGAAAGAAGATACAAATCACACGCATAATGGATGAGAGGAACCGACAGGTTACTTTTACAAAGC
GAAAGTTTGGATTGATGAAGAAAGCCTATGAACTCAGTGTGCTCTGTGACTGTGAAATAGCACTCATCAT
TTTCAACAGCTCTAATAAGCTGTTTCAGTACGCTAGCACTGACATGGACAAAGTCCTTCTCAAATACACT
GAGTATAACGAGCCTCATGAAAGCAGGACGAACTCGGATATCGTTGAGACGTTAAGAAAGAAAGGCCTTA
ATGGTTGTGAGAGCCCTGATGCTGACGATTACTTTGAGCACAGTCCACTCTCGGAGGACAGATTCAGCAA
ACTAAATGAAGATAGTGATTTTATTTTCAAACGAGGCCCTCCTGGCTTGCCACCTCAGAACTTCTCAATG
TCTGTCACAGTCCCTGTGACCAGCCCTAATGCTTTGTCGTACACTAACCCAGGGAGTTCACTCGTGTCAC
CGTCTTTGGCAGCCAGCTCAACATTAGCAGATTCGAGCATGCTGTCTCCACCCCCAGCCACGCTACATAG
AAATGTGTCCCCAGGAGCTCCGCAGAGACCACCAAGTACCGGCAGTGCAAGTGGGATGTTGAGCACTACA
GACCTCACGGTGCCAAATGGAGCTGGAAATAGTCCTGTGGGGAATGGATTTGTAAACTCAAGGGCCTCTC
CAAATTTGATTGGAAATACTGGTGCAAATAGTTTAGGCAAAGTCATGCCTACAAAGTCTCCCCCGCCACC
AGGTGGTGGCAGTCTTGGAATGAACAGTCGGAAACCAGATCTACGAGTTGTCATTCCCCCATCAAGCAAG
GGCATGATGCCCCCACTTTCGGAGGAAGAGGAATTGGAGTTGAATGCCCAAAGGATAAGCAGTTCTCAAG
CCACTCAACCTCTTGCCACGCCTGTAGTGTCTGTGACAACTCCGAGCTTGCCTCCACAGGGACTAGTGTA
CTCAGCAATGCCGACAGCCTACAACACTGATTACTCACTGACCAGCGCTGACCTGTCTGCCCTGCAAGGC
TTTACTTCCCCTGGAATGCTGTCTCTGGGGCAGGCTTCAGCCTGGCAGCAGCACCATCTAGGACAAGCAG
CCCTCAGCTCTCTGGTGGCTGGAGGGCAGTTATCTCAGGGTTCAAATTTGTCCATTAACACCAACCAGAA
CATCAACATTAAGTCAGAGCCAATTTCACCTCCCCGTGATAGAATGACCCCATCAGGCTTCCAACAGCAG
CAGCAGCAGCCACAACAGCAGCCACCGCCACAACCTCCACAGCCCCAACCCCGGCAGGAAATGGGGCGCT
CCCCTGTGGACAGTCTGAGCAGCTCCAGCAGCTCCTATGATGGCAGTGACCGGGAGGATCCACGGGGTGA
CTTCCATTCTCCAATTGTGCTTGGCCGACCTCCAAATACTGAGGACAGAGAAAGCCCTTCTGTAAAACGC
ATGAGGATGGACACATGGGTGACCTAA

Translation (498 aa):
MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYT
EYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSM
SVTVPVTSPNALSYTNPGSSLVSPSLAASSTLADSSMLSPPPATLHRNVSPGAPQRPPSTGSASGMLSTT
DLTVPNGAGNSPVGNGFVNSRASPNLIGNTGANSLGKVMPTKSPPPPGGGSLGMNSRKPDLRVVIPPSSK
GMMPPLSEEEELELNAQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQG
FTSPGMLSLGQASAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQ
QQQPQQQPPPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKR
MRMDTWVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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