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Report for CCDS40006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40006.1 Public Mus musculus 7 Rps17 23 108 98 CCDS HistoryNCBI Gene:20068Re-query CCDS DB by CCDS ID:40006.1Re-query CCDS DB by GeneID:20068See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40006.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080813.4 ENSMUSP00000079628.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080813.4Link to Ensembl Protein Viewer:ENSMUSP00000079628.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080813Re-query CCDS DB by Protein ID:ENSMUSP00000079628
Original member Current member NCBI NM_009092.3 NP_033118.1 Accepted alive Link to Nucleotide Sequence:NM_009092.3Link to Protein Sequence:NP_033118.1Re-query CCDS DB by Nucleotide ID:NM_009092Re-query CCDS DB by Protein ID:NP_033118Link to BLAST:NP_033118.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033118.1 135 P63276 135 100% 0 0

Chromosomal Locations for CCDS 40006.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81342769 81342849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81343735 81343800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81344311 81344416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81344857 81345008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81345202 81345204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGGGCCGCGTTCGCACCAAGACCGTGAAGAAGGCTGCCCGGGTCATCATCGAGAAGTACTACACGCGTC
TGGGTAATGACTTCCACACCAACAAGCGCGTGTGCGAGGAGATCGCCATTATCCCCAGCAAGAAGCTTCG
GAACAAGATAGCCGGCTATGTCACGCATCTGATGAAGCGGATTCAGAGAGGGCCTGTGAGAGGCATCTCT
ATCAAGTTGCAGGAAGAAGAGAGAGAGAGGAGAGATAACTACGTTCCTGAGGTCTCAGCCCTAGATCAGG
AGATCATTGAGGTGGATCCCGACACCAAGGAGATGCTGAAGCTCCTGGACTTTGGCAGTCTCTCTAACCT
TCAGGTCACTCAGCCTACAGTTGGCATGAATTTCAAAACACCACGTGGAGCTGTTTAA

Translation (135 aa):
MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGIS
IKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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