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Report for CCDS4006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4006.1 Public Homo sapiens 5 OCLN 24 110 108 CCDS HistoryNCBI Gene:100506658Re-query CCDS DB by CCDS ID:4006.1Re-query CCDS DB by GeneID:100506658See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355237.6 ENSP00000347379.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355237.6Link to Ensembl Protein Viewer:ENSP00000347379.2Re-query CCDS DB by Nucleotide ID:ENST00000355237Re-query CCDS DB by Protein ID:ENSP00000347379
Original member Current member EBI ENST00000396442.7 ENSP00000379719.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396442.7Link to Ensembl Protein Viewer:ENSP00000379719.2Re-query CCDS DB by Nucleotide ID:ENST00000396442Re-query CCDS DB by Protein ID:ENSP00000379719
Original member Current member EBI ENST00000681041.1 ENSP00000505426.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681041.1Link to Ensembl Protein Viewer:ENSP00000505426.1Re-query CCDS DB by Nucleotide ID:ENST00000681041Re-query CCDS DB by Protein ID:ENSP00000505426
Original member Current member EBI ENST00000681586.1 ENSP00000505541.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681586.1Link to Ensembl Protein Viewer:ENSP00000505541.1Re-query CCDS DB by Nucleotide ID:ENST00000681586Re-query CCDS DB by Protein ID:ENSP00000505541
Original member Current member EBI ENST00000680027.1 ENSP00000506162.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680027.1Link to Ensembl Protein Viewer:ENSP00000506162.1Re-query CCDS DB by Nucleotide ID:ENST00000680027Re-query CCDS DB by Protein ID:ENSP00000506162
Original member Current member NCBI NM_001205254.2 NP_001192183.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001205254.2Link to Protein Sequence:NP_001192183.1Re-query CCDS DB by Nucleotide ID:NM_001205254Re-query CCDS DB by Protein ID:NP_001192183Link to BLAST:NP_001192183.1
Original member Current member NCBI NM_002538.4 NP_002529.1 Accepted alive Link to Nucleotide Sequence:NM_002538.4Link to Protein Sequence:NP_002529.1Re-query CCDS DB by Nucleotide ID:NM_002538Re-query CCDS DB by Protein ID:NP_002529Link to BLAST:NP_002529.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192183.1 522 Q16625-1 522 100% 0 0
NP_002529.1 522 Q16625-1 522 100% 0 0

Chromosomal Locations for CCDS 4006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 69504245 69504294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69509141 69509819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69513948 69514109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69534694 69534839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69544904 69545119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69547930 69548101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69551544 69551585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69553570 69553671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGTCATCCAGGCCTCTTGAAAGTCCACCTCCTTACAGGCCTGATGAATTCAAACCGAATCATTATGCAC
CAAGCAATGACATATATGGTGGAGAGATGCATGTTCGACCAATGCTCTCTCAGCCAGCCTACTCTTTTTA
CCCAGAAGATGAAATTCTTCACTTCTACAAATGGACCTCTCCTCCAGGAGTGATTCGGATCCTGTCTATG
CTCATTATTGTGATGTGCATTGCCATCTTTGCCTGTGTGGCCTCCACGCTTGCCTGGGACAGAGGCTATG
GAACTTCCCTTTTAGGAGGTAGTGTAGGCTACCCTTATGGAGGAAGTGGCTTTGGTAGCTACGGAAGTGG
CTATGGCTATGGCTATGGTTATGGCTATGGCTACGGAGGCTATACAGACCCAAGAGCAGCAAAGGGCTTC
ATGTTGGCCATGGCTGCCTTTTGTTTCATTGCCGCGTTGGTGATCTTTGTTACCAGTGTTATAAGATCTG
AAATGTCCAGAACAAGAAGATACTACTTAAGTGTGATAATAGTGAGTGCTATCCTGGGCATCATGGTGTT
TATTGCCACAATTGTCTATATAATGGGAGTGAACCCAACTGCTCAGTCTTCTGGATCTCTATATGGTTCA
CAAATATATGCCCTCTGCAACCAATTTTATACACCTGCAGCTACTGGACTCTACGTGGATCAGTATTTGT
ATCACTACTGTGTTGTGGATCCCCAGGAGGCCATTGCCATTGTACTGGGGTTCATGATTATTGTGGCTTT
TGCTTTAATAATTTTCTTTGCTGTGAAAACTCGAAGAAAGATGGACAGGTATGACAAGTCCAATATTTTG
TGGGACAAGGAACACATTTATGATGAGCAGCCCCCCAATGTCGAGGAGTGGGTTAAAAATGTGTCTGCAG
GCACACAGGACGTGCCTTCACCCCCATCTGACTATGTGGAAAGAGTTGACAGTCCCATGGCATACTCTTC
CAATGGCAAAGTGAATGACAAGCGGTTTTATCCAGAGTCTTCCTATAAATCCACGCCGGTTCCTGAAGTG
GTTCAGGAGCTTCCATTAACTTCGCCTGTGGATGACTTCAGGCAGCCTCGTTACAGCAGCGGTGGTAACT
TTGAGACACCTTCAAAAAGAGCACCTGCAAAGGGAAGAGCAGGAAGGTCAAAGAGAACAGAGCAAGATCA
CTATGAGACAGACTACACAACTGGCGGCGAGTCCTGTGATGAGCTGGAGGAGGACTGGATCAGGGAATAT
CCACCTATCACTTCAGATCAACAAAGACAACTGTACAAGAGGAATTTTGACACTGGCCTACAGGAATACA
AGAGCTTACAATCAGAACTTGATGAGATCAATAAAGAACTCTCCCGTTTGGATAAAGAATTGGATGACTA
TAGAGAAGAAAGTGAAGAGTACATGGCTGCTGCTGATGAATACAATAGACTGAAGCAAGTGAAGGGATCT
GCAGATTACAAAAGTAAGAAGAATCATTGCAAGCAGTTAAAGAGCAAATTGTCACACATCAAGAAGATGG
TTGGAGACTATGATAGACAGAAAACATAG

Translation (522 aa):
MSSRPLESPPPYRPDEFKPNHYAPSNDIYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTSPPGVIRILSM
LIIVMCIAIFACVASTLAWDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDPRAAKGF
MLAMAAFCFIAALVIFVTSVIRSEMSRTRRYYLSVIIVSAILGIMVFIATIVYIMGVNPTAQSSGSLYGS
QIYALCNQFYTPAATGLYVDQYLYHYCVVDPQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNIL
WDKEHIYDEQPPNVEEWVKNVSAGTQDVPSPPSDYVERVDSPMAYSSNGKVNDKRFYPESSYKSTPVPEV
VQELPLTSPVDDFRQPRYSSGGNFETPSKRAPAKGRAGRSKRTEQDHYETDYTTGGESCDELEEDWIREY
PPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGS
ADYKSKKNHCKQLKSKLSHIKKMVGDYDRQKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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