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Report for CCDS40089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40089.1 Public Mus musculus 7 Usp47 23 108 98 CCDS HistoryNCBI Gene:74996Re-query CCDS DB by CCDS ID:40089.1Re-query CCDS DB by GeneID:74996See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106653.3 ENSMUSP00000102264.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106653.3Link to Ensembl Protein Viewer:ENSMUSP00000102264.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106653Re-query CCDS DB by Protein ID:ENSMUSP00000102264
Original member NCBI NM_133758.3 NP_598519.2 Updated not alive Link to Nucleotide Sequence:NM_133758.3Link to Protein Sequence:NP_598519.2Re-query CCDS DB by Nucleotide ID:NM_133758Re-query CCDS DB by Protein ID:NP_598519
Current member NCBI NM_133758.4 NP_598519.2 Accepted alive Link to Nucleotide Sequence:NM_133758.4Link to Protein Sequence:NP_598519.2Re-query CCDS DB by Nucleotide ID:NM_133758Re-query CCDS DB by Protein ID:NP_598519Link to BLAST:NP_598519.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598519.2 1356 Q8BY87-2 1356 100% 0 0

Chromosomal Locations for CCDS 40089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 112023708 112023746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112053217 112053420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112054842 112054955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112056475 112056613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112058972 112059068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112063246 112063391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112064365 112064444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112067085 112067234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112074472 112074567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112074657 112074809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112077792 112077959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112082430 112082561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112083088 112083164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112083857 112083912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112085995 112086107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112087001 112087105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112087766 112087973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112089525 112089640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112091405 112091524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112092706 112093486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112101738 112101913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112102439 112102519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112103950 112104065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112104350 112104468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112106779 112106909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112108436 112108483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112108574 112108704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112109945 112110119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4071 nt):
ATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAGGAGATAGAAAATGCTGCTGAAGAACCTAGAGTCT
TATGTATAATACAAGACACTACTAACTCGAAGACAGTGAGTGAACGGATCACATTAAATTTACCAGCATC
TACCCCAGTCCGAAAGCTCTTTGAAGATGTGGCCAACAAAGTAGGCTACATAAATGGAACCTTTGATTTG
ACCAGGGAAAATGGAGTCACTACTGCTGACATGGCACCACTGGATCACACCAGTGACAAGTCTCTTCTTG
ATGCTAATTTTGAGCCAGGAAAGAAGAACTTTCTGCATTTGACAGATAAAGATGGTGAACCGCCTCAGAT
GTTGTTGGAGGACTCCAATAACGTGGATGACAGCGTGCATGACAGGTTCATAGGTCCACTGCCAAGAGAA
GGTTCTGTGGCCTCTACCAATGATTATGTCAGCCAGAACTACTCCTATTCATCAATTTTGAACAAGTCAG
AAACTGGTTATGTGGGATTAGTAAACCAGGCGATGACGTGCTATTTGAATAGCCTTTTGCAAACACTTTT
TATGACTCCTGAATTTAGGAATGCATTATATAAGTGGGAATTTGAAGACTCTGAAGAAGATCCTGTAACG
AGTATCCCATACCAGCTTCAAAGGCTTTTTGTTTTGTTACAAACCAGCAAAAAGAGAGCAATTGAGACCA
CAGATGTTACAAGGAGCTTTGGATGGGATAGCAGTGAGGCTTGGCAACAGCATGATGTACAAGAACTGTG
CCGTGTTATGTTTGATGCTTTGGAACAGAAATGGAAGCAAACAGAACAGGCTGATCTTATAAATGAGCTG
TACCAAGGCAAGCTGAAAGATTATGTGAGGTGTCTGGAATGCGGTTATGAAGGCTGGAGAATTGACACGT
ATCTTGATATTCCACTGGTCATCCGACCTTATGGGTCCAGCCAAGCGTTTGCTAGTGTGGAAGAAGCGTT
GCATGCATTTATTCAACCAGAGATCTTGGATGGCCCAAATCAATATTTTTGTGAACGTTGTAAGAAGAAG
TGTGATGCTCGGAAGGGCCTTCGGTTTTTGCATTTCCCCTATCTGCTGACCTTACAGTTGAAAAGGTTTG
ATTTTGATTATACAACCATGCATAGAATTAAACTGAATGATCGAATGTCATTTCCGGAGGAGCTGGATAT
GAGCACATTTATTGATATTGAAGATGAGAAATCTCCTCAGACTGAAAGTTGCACTGATAGTGGAGCAGAA
AATGAAGGCAGTTGCCACAGCGACCAGATGAGTAATGATTTCTCCACGGATGATGCTGTTGATGAAGGGA
TATGCCTGGAGAGCAGTAGTGGGAGTGAGAAGATTTCAAAACCTGGCCTGGAAAAGAACTCCCTGATGTA
TGAGCTCTTCTCAGTGATGGTGCATTCAGGGAGTGCTGCTGGAGGACACTATTATGCTTGCATAAAGTCT
TTCAGTGACGATCAATGGTACAGTTTCAATGACCAACATGTGAGCAGGATAACACAAGAAGACATTAAGA
AGACACATGGTGGGTCTTCAGGAAGCAGAGGCTACTACTCCAGTGCTTTTGCAAGCTCAACAAATGCATA
TATGCTGATATACAGACTGAAGGATCCAACAAGAAATGCAAAGTTTCTAGAAGTGGACGAGTACCCAGAA
CACATTAAGAATCTGGTGCAGAAGGAGAGAGAGCTGGAAGAGCAGGAAAAGAGGCAACGAGAGATTGAAC
GCAACACGTGCAAGATAAAATTATTTTGTTTGCATCCTGTGAAACAAGTAATGATGGAAAACAAGCTGGA
GGTTCATAAGGATAAGACGCTAAAGGAAGCCGTTGAAATGGCTTATAAGATGATGGATTTAGAAGATGTG
ATTCCCTTGGATTGCTGTCGCCTGGTAAAATATGACGAGTTTCATGATTACCTGGAACGATCGTATGAGG
GAGAAGAAGATACACCAATGGGGTTGCTTCTAGGAGGAGTCAAGTCCACATACATGTTTGATCTGCTGTT
GGAAACGAGAAAGCCTGATCAAATTTTTCAGTCTTACAAACCTGGAGAAGTGATGGTGAAAGTTCATGTT
GTTGATCTGAAAGCAGAGACTGTCGCTGCTCCTGTAACAGTGCGTGCGTATTTAAATCAGACAGTTACAG
AGTTTAAACAGCTGATCTCAAAGGCCACGCACTTACCTGCAGACTCCATGAGGATAGTGCTGGAGCGCTG
CTACAATGACCTGCGCCTTCTCAGCATGCCCAGCAAGACCCTGAAGGCTGAGGGCTTCTTCAGAAGTAAC
AAGGTGTTTGTTGAAAGCTCTGAGACAGTGGATCACCAGGCAGCCTTTACAGACTCCCACTTGTGGAAAC
TCCTGGATCGACATGCAAATACAATCCGGTTATTTGTTTTGCTGCCTGAACAATCTCCAGGATCATATTC
GAAAAGGACAGCATACCAGAAAGCTGGAGGTGATTCTGGTAATGTGGACGATGATTGTGAAAGAGTCAAA
GGACCTGCAGGGAATTTAAAGTCTGTGGATGCTATTCTAGAAGAGAGCACTGAAAAACTGAAAAGCTTGT
CACTGCAGCAGCAGCAGCAAGATGGGGACAACGGAGACAGCAGCAAAAGCACTGAGACAAGTGACTTTGA
AAATATTGAATCCCCTCTCAATGAGAGGGGCTCTTCCACCTCTGTGGATAATCGAGAACTTGAACAGCAC
ATTCAGACTTCTGACCCAGAAAACTTTCAGTCTGAGGAACGCTCGGACTCAGATGTGAATAATGACCGGA
GTACAAGTTCGGTAGACAGTGATATTCTTAGCTCCAGTCACAGCAGTGACACTTTGTGCAATGCAGACAG
CGCTCAGATTCCTCTGGCCAATGGACTTGACTCTCACAGTATCACAAGTAGTAGAAGAACTAAAGCAAAC
GAGGGGAAAAAGGAGACCTGGGACACAGCTGAAGAAGACTCTGGGACTGACAGTGAATATGACGAGAGTG
GCAAGAGCAGGGGGGACATGCAGTACATGTACTTCAAAGCTGACCCCTACACTGCGGATGAAGGCTCTGG
GGAAGGACACAAATGGTTGATGGTGCATGTTGATAAGAGAATCACCCTGGCAGCTTTCAAACAGCATTTA
GAACCTTTTGTTGGAGTCCTCTCCTCTCACTTCAAGGTTTTTCGAGTGTACACCAGCAATCAAGAGTTTG
AGACCGTCCGGTTGAATGAGACCCTTTCATCATTTTCAGATGACAATAAGATCACAATCCGACTGGGGAG
AGCACTGAAGAAGGGAGAGTACAGAGTTAAAGTGTGCCAGCTCTTAGTCAATGAGCAAGAGCCATGCAAG
TTTCTGCTAGACGCTGTGTTTGCTAAAGGCATGACTGTGCGGCAATCAAAAGAGGAGCTGATTCCTCAAC
TCAGGGAGCAGTGTGGCTTAGACCTCAGCATCGACAGGTTTCGTCTAAGGAAGAAAACATGGAAGAATCC
TGGCACTGTCTTTTTGGATTATCATATTTATGAAGAAGATATTAATATTTCCAGCAACTGGGAAGTTTTC
CTGGAAGTTCTTGATGGTGTGGAGAAGATGAAGTCCATGTCACAGCTTGCCATCTTAACAAGACGCTGGA
GGCCTGCAGAGATGAAGTTGGACCCCTTCCAGGAGCTTGTGTTGGAAAGCAATAGTGTTGATGAACTCCG
AGAGAAGCTAAGTGAAATCAGTGGGATTCCTTTGGAAGACATTGAATTTGCCAAGGGTAGGGGAACCTTC
CCCTGTGATATTTCTGTCCTTGATATTCATCAAGATTTGGACTGGAATCCTAAAGTCTCTACCCTGAATG
TTTGGCCTCTTTATATCTGTGATGATGGTGCCGTCATATTTTATAGGGATAGAACAGAAGAAGTGATGGA
ATTGACAGATGAGCAAAGAAATGAATTGATGAAAAAGGAAAGCAGCCGACTGCAGAAGACGGGACATCGT
GTGACATACTCCCCTCGCAAAGAGAAAGCACTCAAGATCTACCTGGATGGGGCGCCAAATAAAGATGTGG
CTCAAGACTGA

Translation (1356 aa):
MVPGEENQLVPKEIENAAEEPRVLCIIQDTTNSKTVSERITLNLPASTPVRKLFEDVANKVGYINGTFDL
TRENGVTTADMAPLDHTSDKSLLDANFEPGKKNFLHLTDKDGEPPQMLLEDSNNVDDSVHDRFIGPLPRE
GSVASTNDYVSQNYSYSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEDSEEDPVT
SIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINEL
YQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYGSSQAFASVEEALHAFIQPEILDGPNQYFCERCKKK
CDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMSFPEELDMSTFIDIEDEKSPQTESCTDSGAE
NEGSCHSDQMSNDFSTDDAVDEGICLESSSGSEKISKPGLEKNSLMYELFSVMVHSGSAAGGHYYACIKS
FSDDQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPTRNAKFLEVDEYPE
HIKNLVQKERELEEQEKRQREIERNTCKIKLFCLHPVKQVMMENKLEVHKDKTLKEAVEMAYKMMDLEDV
IPLDCCRLVKYDEFHDYLERSYEGEEDTPMGLLLGGVKSTYMFDLLLETRKPDQIFQSYKPGEVMVKVHV
VDLKAETVAAPVTVRAYLNQTVTEFKQLISKATHLPADSMRIVLERCYNDLRLLSMPSKTLKAEGFFRSN
KVFVESSETVDHQAAFTDSHLWKLLDRHANTIRLFVLLPEQSPGSYSKRTAYQKAGGDSGNVDDDCERVK
GPAGNLKSVDAILEESTEKLKSLSLQQQQQDGDNGDSSKSTETSDFENIESPLNERGSSTSVDNRELEQH
IQTSDPENFQSEERSDSDVNNDRSTSSVDSDILSSSHSSDTLCNADSAQIPLANGLDSHSITSSRRTKAN
EGKKETWDTAEEDSGTDSEYDESGKSRGDMQYMYFKADPYTADEGSGEGHKWLMVHVDKRITLAAFKQHL
EPFVGVLSSHFKVFRVYTSNQEFETVRLNETLSSFSDDNKITIRLGRALKKGEYRVKVCQLLVNEQEPCK
FLLDAVFAKGMTVRQSKEELIPQLREQCGLDLSIDRFRLRKKTWKNPGTVFLDYHIYEEDINISSNWEVF
LEVLDGVEKMKSMSQLAILTRRWRPAEMKLDPFQELVLESNSVDELREKLSEISGIPLEDIEFAKGRGTF
PCDISVLDIHQDLDWNPKVSTLNVWPLYICDDGAVIFYRDRTEEVMELTDEQRNELMKKESSRLQKTGHR
VTYSPRKEKALKIYLDGAPNKDVAQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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