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Report for CCDS40094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40094.1 Public Mus musculus 7 Psma1 23 108 98 CCDS HistoryNCBI Gene:26440Re-query CCDS DB by CCDS ID:40094.1Re-query CCDS DB by GeneID:26440See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40094.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033008.9 ENSMUSP00000033008.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033008.9Link to Ensembl Protein Viewer:ENSMUSP00000033008.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000033008Re-query CCDS DB by Protein ID:ENSMUSP00000033008
Original member Current member NCBI NM_011965.2 NP_036095.1 Accepted alive Link to Nucleotide Sequence:NM_011965.2Link to Protein Sequence:NP_036095.1Re-query CCDS DB by Nucleotide ID:NM_011965Re-query CCDS DB by Protein ID:NP_036095Link to BLAST:NP_036095.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036095.1 263 Q9R1P4 263 100% 0 0

Chromosomal Locations for CCDS 40094.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 114264900 114264956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114266434 114266544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114267121 114267200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114269721 114269850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114270333 114270403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114271054 114271142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114273812 114273915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114274026 114274127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114274416 114274460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114276001 114276003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGTTTCGAAACCAGTATGACAATGATGTCACTGTTTGGAGCCCTCAGGGCAGGATTCATCAAATTGAAT
ATGCAATGGAAGCTGTTAAGCAAGGTTCAGCAACAGTTGGTCTAAAATCAAAAACGCACGCAGTGCTGGT
TGCACTGAAGAGAGCACAGTCAGAGCTTGCCGCTCACCAGAAGAAAATTCTCCATGTTGACAACCATATT
GGTATCTCAATTGCGGGTCTAACTGCTGATGCCAGACTGTTATGCAACTTTATGCGCCAGGAGTGTTTGG
ATTCCAGATTTGTGTTTGACAGACCACTTCCTGTGTCTCGTCTTGTGTCTCTAATTGGAAGCAAAACCCA
GATCCCAACACAGCGATATGGCCGGAGGCCGTATGGTGTTGGGCTGCTCATTGCTGGTTATGATGATATG
GGCCCTCATATTTTCCAAACCTGTCCATCTGCTAACTATTTTGACTGCAGAGCTATGTCTATTGGAGCCC
GTTCTCAATCAGCTCGTACTTACCTGGAGAGACATATGTCTGAATTTATGGAGTGCAATTTGGATGAACT
GGTTAAACATGGTCTGCGTGCCTTAAGAGAAACACTCCCTGCAGAGCAGGACCTGACCACAAAGAATGTT
TCCATTGGAATCGTTGGTAAAGACTTGGAATTTACAATCTACGATGATGATGATGTATCTCCATTCCTGG
ATGGTCTTGAAGAAAGACCACAGAGAAAAGCACAGCCTTCACAGGCTGCTGAGGAACCTGCAGAAAAAGC
CGATGAACCAATGGAACATTAA

Translation (263 aa):
MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHI
GISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM
GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNV
SIGIVGKDLEFTIYDDDDVSPFLDGLEERPQRKAQPSQAAEEPAEKADEPMEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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