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Report for CCDS40104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40104.1 Reviewed, update pending Mus musculus 7 Knop1 23 108 98 CCDS HistoryNCBI Gene:66356Re-query CCDS DB by CCDS ID:40104.1Re-query CCDS DB by GeneID:66356See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106550.10 ENSMUSP00000102160.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106550.10Link to Ensembl Protein Viewer:ENSMUSP00000102160.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000106550Re-query CCDS DB by Protein ID:ENSMUSP00000102160
Original member Current member EBI ENSMUST00000116280.8 ENSMUSP00000111984.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116280.8Link to Ensembl Protein Viewer:ENSMUSP00000111984.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116280Re-query CCDS DB by Protein ID:ENSMUSP00000111984
Original member NCBI NM_023197.3 NP_075686.2 Updated not alive Link to Nucleotide Sequence:NM_023197.3Link to Protein Sequence:NP_075686.2Re-query CCDS DB by Nucleotide ID:NM_023197Re-query CCDS DB by Protein ID:NP_075686
Current member NCBI NM_023197.4 NP_075686.3 Pending alive Link to Nucleotide Sequence:NM_023197.4Link to Protein Sequence:NP_075686.3Re-query CCDS DB by Nucleotide ID:NM_023197Re-query CCDS DB by Protein ID:NP_075686Link to BLAST:NP_075686.3

Chromosomal Locations for CCDS 40104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 118845783 118846094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118848449 118848574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118850621 118850689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118852403 118853340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118855623 118855776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGACGCGGTTTCTACAGCAACCCAGGGCACCGGGAGGCCGCGACCCGGAAGGAGAAGGATTTCGAGGG
GGCGGGCCAGAAAGTCGAAGCTGACTTCCGGATCGCGGCTGCGCGGCTGCTCACGCGGGGACGCTTGGCC
TGCTAGCGAACCAGTAATGGTCAGCAAGACCCAGAAAGCAGACCTGGGCCCACAACTCCCAGAGAAGAAG
AAAAAGAAGAAGAAGAAAAAGAGAGTGGTTGCAAATGTCTCAGAACCAGAGACTCAATACTCAGTCTTAA
ACAGTAATGATTATTTTATAGACGCTTCTCCTCCGAGGGCCACGTCCCCTTCTAACAATGTGGATGAGGT
GCAGATCCCCGAGATATCACTGAGCAAGAGAAAGAAGAAAAAAAAGTCCTGTAGCACTCACTTGGAGGAG
TGCCTGGGGGCTGAGCCTACACGGGCAAGGCAGAAAAAGTCACCTAGCCCTAGAAGGCAGGCCCTTGAGC
AGTCAGCAGAAGGCCTCATCAGAGAGAAGAAAAAGAAGAGGCGGAAGTCCTTATCAAAGGCTGCCTCCCA
AGGCTCAGGGCTGAAGACCTCCCCAGACCCCAAGCATGCCAAGGAGGTAAGCAAAGCTGGTAGGAAGTCC
AAAAAACAAAGGAAGGAAAAAAAGGTTCCTGACACGGAAGCCCTTCCTCCCCAGGACGCTTGGCTCTACG
AGGCTGGGGATTCCCTGCACTCATGCTTAGAGGGGGCAGAGGCAGAGGAACAGGCAGCCTTGGGGCAGAA
AAGGAAGCAGGGGAGCCCCAGAGATCACAACATGAAGAAAAAGAAGAAGAAGACCCACCAGGAGGGAGAC
ATCCTCCTGGTCAACTCCAGGGTCTCTGTGGAGAACAGCCTGAAGAAAGGGAGTAAGAAGTCAGTCAAAA
GTGAAGCTTTGGAGTTCGTTCCAATAGACAGCCCGAAGGCCCCTGGGAAGAAGAAAGTCAAATCCAAGAA
AAAGGTGGAACAGCCAGTTGGTGAAGGGCTGGCTGTGAAAAGGAAGAAGAAGAAGAAGAAGAAGAGGAAA
GAGAACGGAGTAAAGGAAGACCCCTGGCAGGAGGAAAAGGAGGAGTCAGACACAGACTTAGAGGTGGTAC
TGGAGAAAAAAGGCAACATGGATGAGACCTGCATAGACCAGGTGAGACGGAAGGCCTTGCAAGAAGAGAT
TGATCGTGAGTCGGGCAAGACAGAGGCTTCAGAACCCAAAAAGTGGACAGTGGGTTTGTCGGTCAAGACA
GAGGCTTCAGAACCCAAAAAGTGGACGGGAACCCAGTTTGGCCAGTGGGATACTGCCGGCTTTGAAAATG
AAGAACAGAAGCTAAAATTCCTGAAGCTTATGGGTGGCTTTAAGCATCTGTCCCCGTCATTCAGCCGCCC
TCCCAGCATGACTATCAGGTCCAACATGGCCCTGGACAAAAAGTCTTCAGAAATGCTCCAGCAGAGTCTG
CAGCAGGACTATGACCGGGCCATGAGCTGGAAGTACAGCCACGGGGCTGGCCTGGGCTTTAACTCTGAGG
CCCGAAAGGTCTTCTACATTGACCGGAATGCCTCCAAGTCTATCAAGTTGCAAGATTAA

Translation (532 aa):
MDAVSTATQGTGRPRPGRRRISRGRARKSKLTSGSRLRGCSRGDAWPASEPVMVSKTQKADLGPQLPEKK
KKKKKKKRVVANVSEPETQYSVLNSNDYFIDASPPRATSPSNNVDEVQIPEISLSKRKKKKKSCSTHLEE
CLGAEPTRARQKKSPSPRRQALEQSAEGLIREKKKKRRKSLSKAASQGSGLKTSPDPKHAKEVSKAGRKS
KKQRKEKKVPDTEALPPQDAWLYEAGDSLHSCLEGAEAEEQAALGQKRKQGSPRDHNMKKKKKKTHQEGD
ILLVNSRVSVENSLKKGSKKSVKSEALEFVPIDSPKAPGKKKVKSKKKVEQPVGEGLAVKRKKKKKKKRK
ENGVKEDPWQEEKEESDTDLEVVLEKKGNMDETCIDQVRRKALQEEIDRESGKTEASEPKKWTVGLSVKT
EASEPKKWTGTQFGQWDTAGFENEEQKLKFLKLMGGFKHLSPSFSRPPSMTIRSNMALDKKSSEMLQQSL
QQDYDRAMSWKYSHGAGLGFNSEARKVFYIDRNASKSIKLQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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