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Report for CCDS40127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40127.1 Public Mus musculus 7 Nupr1 23 108 98 CCDS HistoryNCBI Gene:56312Re-query CCDS DB by CCDS ID:40127.1Re-query CCDS DB by GeneID:56312See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032961.3 ENSMUSP00000032961.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032961.3Link to Ensembl Protein Viewer:ENSMUSP00000032961.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000032961Re-query CCDS DB by Protein ID:ENSMUSP00000032961
Original member Current member NCBI NM_019738.1 NP_062712.1 Accepted alive Link to Nucleotide Sequence:NM_019738.1Link to Protein Sequence:NP_062712.1Re-query CCDS DB by Nucleotide ID:NM_019738Re-query CCDS DB by Protein ID:NP_062712Link to BLAST:NP_062712.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062712.1 80 Q9WTK0 80 100% 0 0

Chromosomal Locations for CCDS 40127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126624903 126625033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126625323 126625434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (243 nt):
ATGGCCACCTTGCCACCAACAGCCAACCCTTCCCAGCAACCTCTAAACCTAGAGGATGAAGATGGAATCC
TGGATGAATATGATCAGTACAGCCTGGCCCATCCCTGTGTCGTCGGGGGAGGTCGGAAAGGTCGGACCAA
GAGAGAAGCTGCTGCCAATACCAACCGCCCTAGCCCTGGCGGGCATGAGAGGAAGCTGCTGACCAAGTTC
CAGAACTCTGAAAGGAAAAAAGCCTGGCGCTGA

Translation (80 aa):
MATLPPTANPSQQPLNLEDEDGILDEYDQYSLAHPCVVGGGRKGRTKREAAANTNRPSPGGHERKLLTKF
QNSERKKAWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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