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Report for CCDS40137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40137.1 Public Mus musculus 7 Maz 23 108 98 CCDS HistoryNCBI Gene:17188Re-query CCDS DB by CCDS ID:40137.1Re-query CCDS DB by GeneID:17188See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032916.5 ENSMUSP00000032916.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032916.5Link to Ensembl Protein Viewer:ENSMUSP00000032916.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032916Re-query CCDS DB by Protein ID:ENSMUSP00000032916
Original member NCBI NM_010772.1 NP_034902.1 Updated not alive Link to Nucleotide Sequence:NM_010772.1Link to Protein Sequence:NP_034902.1Re-query CCDS DB by Nucleotide ID:NM_010772Re-query CCDS DB by Protein ID:NP_034902
Current member NCBI NM_010772.2 NP_034902.1 Accepted alive Link to Nucleotide Sequence:NM_010772.2Link to Protein Sequence:NP_034902.1Re-query CCDS DB by Nucleotide ID:NM_010772Re-query CCDS DB by Protein ID:NP_034902Link to BLAST:NP_034902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034902.1 477 P56671 477 99.7904% 0 1

Chromosomal Locations for CCDS 40137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127023014 127023168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127024444 127024615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127024876 127024939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127025304 127026154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127026228 127026419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGTTCCCCGTGTTCCCTTGCACGCTGCTGGCCCCCCCCTTCCCCGTGCTGGGCCTGGACTCCCGGGGGG
TGGGCGGCCTCATGAACTCCTTCCCGCCACCTCAGGGTCACGCCCAGAACCCCCTGCAGGTCGGGGCTGA
GCTCCAGTCCCGCTTCTTTGCCTCCCAGGGCTGCGCCCAGAGTCCATTCCAGGCCGCGCCGGCGCCCCCA
CCCACGCCCCAGGCCCCGGCGGCCGAGCCCCTCCAAGTGGACTTGCTCCCGGTTCTCGCCGCCGCGCAGG
AATCAGCCGCGGCGGCGGCGGCTGCTGCGGCGGCTGCCGCTGCAGTGGTTACTGCACCCCCGGCCCCTGC
CGCCGCCTCCACAGTGGACACAGCGGCCCTGAAGCAGCCTCCGGCGCCTCCTCCGCCACCCCCTGCCGTC
TCCGCACCAGCCGCCGAGGCCGCGCCCCCCGCCGCGGCCGCCACTATCGCAGCAGCGGCTGCCACCGCTG
TCGTCGCCCCAACCTCGACGGTCGCCGTGGCCCCAGTTGCATCTGTCTTGGAGAAGAAGACAAAGAGCAA
GGGGCCCTACATTTGCGCCCTGTGCGCCAAGGAGTTCAAGAACGGCTACAACCTCCGAAGGCACGAAGCC
ATCCACACGGGAGCCAAGGCTGGCCGGGTCCCTTCGGGTGCTATGAAGATGCCCACCATGGTGCCCCTGA
GCCTCTTGAGTGTCCCCCAGCTGAGCGGGGCCAGCGGGGGTGGGGGAGAAGCCGGGGCTGGCGGCGGCAC
AGCCGCGGTGGCGGCCGGTGGCGTTGTGACCACGACTGCCTCTGGGAAGCGCATCCGGAAGAATCACGCC
TGCGAGATGTGCGGCAAGGCCTTCCGCGACGTCTACCACCTGAACCGACATAAGCTGTCGCATTCGGACG
AGAAGCCCTACCAGTGCCCTGTGTGCCAGCAGCGCTTCAAGCGCAAGGACCGCATGAGTTACCACGTGCG
CTCACATGACGGCGCTGTGCACAAGCCCTACAACTGCTCCCACTGTGGCAAGAGCTTCTCCCGGCCGGAT
CACCTCAACAGTCACGTCAGACAAGTGCACTCAACAGAGCGGCCCTTCAAATGTGAGAAATGTGAGGCAG
CTTTTGCTACGAAGGATCGCCTCCGAGCGCACACAGTCCGACACGAGGAGAAGGTGCCATGTCATGTCTG
TGGCAAGATGCTGAGCTCGGCTTATATTTCCGACCACATGAAGGTGCACAGCCAGGGCCCTCACCATGTC
TGTGAGCTCTGCAACAAAGGTACTGGTGAGGTTTGTCCAATGGCGGCAGCGGCAGCAGCAGCGGCGGCGG
CGGCAGCAGCAGTGGTGGCAGCCCCCCCCACAGCTGTGGGCTCCCTCTCTGGGGCAGAGGGGGTACCAGT
GAGCTCTCAGCCACTTCCCTCCCAGCCTTGGTGA

Translation (477 aa):
MFPVFPCTLLAPPFPVLGLDSRGVGGLMNSFPPPQGHAQNPLQVGAELQSRFFASQGCAQSPFQAAPAPP
PTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVVTAPPAPAAASTVDTAALKQPPAPPPPPPAV
SAPAAEAAPPAAAATIAAAAATAVVAPTSTVAVAPVASVLEKKTKSKGPYICALCAKEFKNGYNLRRHEA
IHTGAKAGRVPSGAMKMPTMVPLSLLSVPQLSGASGGGGEAGAGGGTAAVAAGGVVTTTASGKRIRKNHA
CEMCGKAFRDVYHLNRHKLSHSDEKPYQCPVCQQRFKRKDRMSYHVRSHDGAVHKPYNCSHCGKSFSRPD
HLNSHVRQVHSTERPFKCEKCEAAFATKDRLRAHTVRHEEKVPCHVCGKMLSSAYISDHMKVHSQGPHHV
CELCNKGTGEVCPMAAAAAAAAAAAAAVVAAPPTAVGSLSGAEGVPVSSQPLPSQPW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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