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Report for CCDS4017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4017.1 Public Homo sapiens 5 TMEM171 24 110 108 CCDS HistoryNCBI Gene:134285Re-query CCDS DB by CCDS ID:4017.1Re-query CCDS DB by GeneID:134285See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4017.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454765.7 ENSP00000415030.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000454765.7Link to Ensembl Protein Viewer:ENSP00000415030.2Re-query CCDS DB by Nucleotide ID:ENST00000454765Re-query CCDS DB by Protein ID:ENSP00000415030
Original member Current member NCBI NM_173490.8 NP_775761.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173490.8Link to Protein Sequence:NP_775761.4Re-query CCDS DB by Nucleotide ID:NM_173490Re-query CCDS DB by Protein ID:NP_775761Link to BLAST:NP_775761.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775761.4 324 Q8WVE6-1 324 100% 0 0

Chromosomal Locations for CCDS 4017.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 73123374 73124013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73128390 73128531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73131538 73131730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGTCTCCTGCAGCTGCTGCTGAGCCAGATGGGGACCAGCAGGACAGACACGTCAGCAAACTCATCTTCT
GCTTCTTTGTCTTCGGCGCCGTCTTGTTGTGTGTGGGAGTCCTGCTCTCCATCTTTGGGTTCCAGGCATG
CCAATATAAGCCCCTCCCAGACTGCCCCATGGTGCTCAAGGTGGCGGGGCCTGCATGTGCCGTGGTTGGG
CTTGGGGCTGTGATCCTGGCCCGCTCCCGGGCGCAACTTCAGCTCCGTGCAGGGCTGCAGAGAGGTCAGC
AGATGGACCCCGACCGAGCCTTCATCTGTGGAGAGAGCCGCCAGTTTGCCCAGTGCCTTATCTTTGGGTT
TCTGTTCTTGACAAGCGGCATGCTCATCAGCGTCCTGGGCATTTGGGTCCCTGGATGTGGCTCCAACTGG
GCGCAGGAACCGCTAAACGAGACAGACACTGGCGACTCAGAGCCCCGGATGTGTGGGTTCCTTTCTCTGC
AGATCATGGGGCCCTTGATTGTGCTTGTGGGATTGTGTTTCTTCGTGGTTGCCCATGTTAAGAAGAGAAA
CACGCTGAATGCTGGCCAGGATGCCTCTGAGAGAGAAGAGGGACAGATCCAGATTATGGAGCCTGTCCAG
GTCACTGTAGGTGACTCGGTAATAATATTTCCACCCCCTCCACCACCTTACTTTCCTGAATCTTCAGCTT
CTGCGGTCGCTGAGAGTCCTGGAACTAACAGTCTGCTTCCGAATGAAAACCCCCCTTCATATTACAGTAT
TTTCAACTATGGCAGGACCCCAACTTCAGAGGGTGCAGCCTCTGAAAGAGACTGTGAATCTATATATACC
ATTTCTGGGACGAATTCATCTTCTGAGGCCTCACACACTCCACATCTTCCATCTGAATTGCCTCCTAGAT
ATGAAGAAAAAGAAAATGCTGCAGCTACATTCTTGCCTCTATCTTCTGAGCCTTCCCCACCGTAA

Translation (324 aa):
MSPAAAAEPDGDQQDRHVSKLIFCFFVFGAVLLCVGVLLSIFGFQACQYKPLPDCPMVLKVAGPACAVVG
LGAVILARSRAQLQLRAGLQRGQQMDPDRAFICGESRQFAQCLIFGFLFLTSGMLISVLGIWVPGCGSNW
AQEPLNETDTGDSEPRMCGFLSLQIMGPLIVLVGLCFFVVAHVKKRNTLNAGQDASEREEGQIQIMEPVQ
VTVGDSVIIFPPPPPPYFPESSASAVAESPGTNSLLPNENPPSYYSIFNYGRTPTSEGAASERDCESIYT
ISGTNSSSEASHTPHLPSELPPRYEEKENAAATFLPLSSEPSPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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