NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40198.1 Public Mus musculus 7 Cars1 23 108 98 CCDS HistoryNCBI Gene:27267Re-query CCDS DB by CCDS ID:40198.1Re-query CCDS DB by GeneID:27267See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40198.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010899.13 ENSMUSP00000010899.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010899.13Link to Ensembl Protein Viewer:ENSMUSP00000010899.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000010899Re-query CCDS DB by Protein ID:ENSMUSP00000010899
Original member Current member NCBI NM_013742.5 NP_038770.3 Accepted alive Link to Nucleotide Sequence:NM_013742.5Link to Protein Sequence:NP_038770.3Re-query CCDS DB by Nucleotide ID:NM_013742Re-query CCDS DB by Protein ID:NP_038770Link to BLAST:NP_038770.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038770.3 831 Q9ER72-1 831 100% 0 0

Chromosomal Locations for CCDS 40198.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143557872 143558006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143559128 143559211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143559649 143559708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143561859 143561926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143562961 143563041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143564984 143565065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143568315 143568383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143568933 143569122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143569400 143569497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143569833 143569936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143570020 143570149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143570542 143570670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143571484 143571596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143574513 143574634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143575918 143576006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143576586 143576726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143584648 143584797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143585699 143585797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143586415 143586511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143587105 143587193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143588492 143588583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143592412 143592660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143599982 143600006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2496 nt):
ATGGCAGGTTCCTCCGCGGAGCAGGCTGCCGACTACAGGTCCATTCTGAGCATTAGTGACGAGGCAGCCA
GGGTGCAGGCCCTGGACCAACACCTCAGCACGCGTAGCTATATCCAGGGGTACTCCCTATCCCAGGCAGA
TGTGGACGTGTTCAGGCAGCTCTCGGCCCCTCCCGCTGACTCAAGGCTCTTCCACGTGGCTCGGTGGTTC
AGGCACATAGAAGCGCTCCTGGGTGGCCCCCAAGGCAGAGACGAGCCCTGCAGGCTTCAAGCAAGTAAAG
GCCGGCGAGTGCAGCCTCAGTGGTCCCCCCCAGCAGGGACTGAGCCCTGCAGGCTCCGCCTCTATAATAG
CCTCACCCGGAACAAGGATGTATTTATACCTCAAGATGGGAAGAAGGTGACGTGGTACTGTTGCGGGCCG
ACTGTCTATGATGCGTCTCACATGGGACATGCCAGGTCCTACATCTCCTTCGATATCCTGAGGAGGGTGC
TGAGGGATTACTTCCAGTATGATGTCTTTTACTGCATGAACATCACAGACATTGATGATAAGATCATCAG
GCGGGCACGGCAGAACTACCTGTTTGAGCAGTATCGGGAGCAGAAACCCCCAGCCACCCAGCTCCTGAAG
GATGTCCGTGATGCCATGAAGCCATTTTCAGTCAAGTTAAGTGAGACAACAGATCCCGACAAGAGGCAGA
TGCTGGAGCGGATCCAGAACTCTGTGAAACTTGCCACAGAACCACTGGAACAGGCTGTGCGATCCAGCCT
CTCTGGAGAGGAAGTAGACAGCAAAGTACAGGTGTTGCTGGAGGAAGCAAAGGACTTGCTCTCTGACTGG
CTGGATTCCACAGGTGGCAGTGAGGTGACTGACAACTCGATTTTCTCCAAACTGCCCAAGTTCTGGGAAG
AAGAGTTCCACAAAGACATGGAAGCCCTGAATGTTCTCCCTCCTGATGTCCTAACCCGTGTCAGTGAATA
TGTGCCAGAAATTGTGAACTTCGTCCAGAAGATTGTGGACAATGGTTATGGTTATGCTTCAAATGGATCT
GTTTACTTCGACACAGCCAAGTTTGCTGCTAGTGAAAAGCACTCCTATGGGAAGCTGGTGCCTGAGGCCG
TTGGGGATCAGAAGGCACTTCAGGAAGGGGAAGGTGATCTGAGCATCTCTGCTGACCGCCTTAGTGAGAA
ACGCTCTCCCAATGACTTTGCCTTGTGGAAGGCCTCCAAGCCAGGCGAGCCATCCTGGCCTTGCCCCTGG
GGAAAGGGTCGTCCCGGATGGCACATAGAGTGTTCTGCTATGGCAGGCACGCTCCTGGGAGCCTCAATGG
ACATTCATGGTGGAGGGTTTGACCTCCGCTTCCCCCACCATGACAATGAGCTGGCACAGTCGGAGGCCTA
CTTTGAAAATGACTGCTGGGTCAGGTACTTCTTGCACACGGGCCACTTGACGATAGCAGGCTGCAAGATG
TCCAAGTCACTGAAAAACTTTATCACCATTAAAGATGCCTTGAAGAAGCACTCAGCACGGCAGCTGCGAC
TGGCATTCCTCATGCACTCATGGAAAGACACACTGGACTATTCCAGCAACACTATGGAGTCTGCTCTTCA
GTATGAAAAATTCATGAACGAGTTTTTCTTAAATGTGAAAGACATCCTCCGAGCCCCTGTAGACATCACT
GGCCAGTTTGAAAAGTGGGAAGCTGAAGAAGTGGAGCTAAATAAGAACTTCTATGGCAAGAAGACCGCAG
TTCACGAAGCCTTGTGTGATAACATTGACACCCGGACTGTCATGGAAGAGATGCGGGCTTTGGTCAGTCA
GTGCAACCTCTACATGGCAGCCAGGAAGGCTGAACGGAGGAGGCCCAACCGGGCTCTGCTGGAGAACATT
GCCATGTACCTCACCCACATGCTGAAGATCTTTGGGGCCATAGAGGAGGAGAGCCCCCTGGGGTTCCCAG
TTGGTGGGCCTGGAACCAACCTGAACCTCGAGTCAACAGTCATGCCCTACCTTCAGGTGTTATCAGAATT
CAGAGAGGGAGTACGAAAGATTGCCCGAGAGAAAAAAGTTCTTGAGGTTCTACAGCTCAGTGATGCCCTC
CGGGATGACATCCTGCCTGAGCTTGGGGTCCGGTTTGAAGACCATGAAGGGCTGCCAACAGTGGTGAAGT
TGGTGGACAGAGACACCTTACTGAAAGAGAAGGAAGGAAAGAAAAGGGCTGAAGAAGAGAAGAGGAGGAA
GAAAGAGGAGGCGGCCAGAAAGAAACAGGAGCAAGAAGCAGCAAAGCTGGCCAAGATGAAGATACCACCC
AGTGAGATGTTCCTGTCAGAAGTCAACAAGTATTCTAAATTTGATGAAAATGGTCTGCCTACCCACGACA
CCGAAGGCAAAGAGCTGAGCAAGGGCCAGGCCAAGAAGCTGAAGAAGCTCTTTGAAGCCCAGGAGAAACT
GTACAAGGAGTATCTGCAAATGTTACAGAATGGCAGCCTCCAGTGA

Translation (831 aa):
MAGSSAEQAADYRSILSISDEAARVQALDQHLSTRSYIQGYSLSQADVDVFRQLSAPPADSRLFHVARWF
RHIEALLGGPQGRDEPCRLQASKGRRVQPQWSPPAGTEPCRLRLYNSLTRNKDVFIPQDGKKVTWYCCGP
TVYDASHMGHARSYISFDILRRVLRDYFQYDVFYCMNITDIDDKIIRRARQNYLFEQYREQKPPATQLLK
DVRDAMKPFSVKLSETTDPDKRQMLERIQNSVKLATEPLEQAVRSSLSGEEVDSKVQVLLEEAKDLLSDW
LDSTGGSEVTDNSIFSKLPKFWEEEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGS
VYFDTAKFAASEKHSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPW
GKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTIAGCKM
SKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSSNTMESALQYEKFMNEFFLNVKDILRAPVDIT
GQFEKWEAEEVELNKNFYGKKTAVHEALCDNIDTRTVMEEMRALVSQCNLYMAARKAERRRPNRALLENI
AMYLTHMLKIFGAIEEESPLGFPVGGPGTNLNLESTVMPYLQVLSEFREGVRKIAREKKVLEVLQLSDAL
RDDILPELGVRFEDHEGLPTVVKLVDRDTLLKEKEGKKRAEEEKRRKKEEAARKKQEQEAAKLAKMKIPP
SEMFLSEVNKYSKFDENGLPTHDTEGKELSKGQAKKLKKLFEAQEKLYKEYLQMLQNGSLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH