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Report for CCDS40237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40237.1 Public Mus musculus 8 Coprs 23 108 98 CCDS HistoryNCBI Gene:66423Re-query CCDS DB by CCDS ID:40237.1Re-query CCDS DB by GeneID:66423See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033839.8 ENSMUSP00000033839.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033839.8Link to Ensembl Protein Viewer:ENSMUSP00000033839.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033839Re-query CCDS DB by Protein ID:ENSMUSP00000033839
Original member Current member NCBI NM_025556.3 NP_079832.1 Accepted alive Link to Nucleotide Sequence:NM_025556.3Link to Protein Sequence:NP_079832.1Re-query CCDS DB by Nucleotide ID:NM_025556Re-query CCDS DB by Protein ID:NP_079832Link to BLAST:NP_079832.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079832.1 173 Q9CQ13 173 100% 0 0

Chromosomal Locations for CCDS 40237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13885032 13885201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13885666 13885881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13887760 13887826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13890167 13890235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGACCCTCAGGCAGCCACCGGTCGGGGCCCGGGCGAGCGGAGTTCGCAGGAGGCCCCCAGCGCGGAGG
CTGGCTTTGCCACAGCTGACCTCTCTGGTCGGGAGACGGAGACTGAGCTGGCCGTGGATCGACTAGCCAG
TGGAGCTCAGAGCATCCCTGCTGACATTCCTGCCCATGCCGAGGGCCCAAGTTCTGAGGAGGAAGGCTTT
GCAGTGGAGAAGGAAGCTGATGGGGAGTTGTATGCCTGGGAGCTGTCAGAGGGTCCATCCTGCCCACCCA
TGGAACAGGCTGCAGATCTTTTTAATGAGGACTGGGACTTGGAGCTGAAAGCAGACCAAGGAAATCCTTA
CGATGCTGATGACATCCAGGGGAGCATTTCCCAAGAGATCAAGCCTTGGGTGTGCTGTGCACCACAGGGA
GACATGATATACGACCCCAGTTGGCACCATCCACCTCCACTCATACCACACTACTCCAAGATGGTCTTCG
AAACAGGACAGTTTGATGATGCCGAAGACTAG

Translation (173 aa):
MDPQAATGRGPGERSSQEAPSAEAGFATADLSGRETETELAVDRLASGAQSIPADIPAHAEGPSSEEEGF
AVEKEADGELYAWELSEGPSCPPMEQAADLFNEDWDLELKADQGNPYDADDIQGSISQEIKPWVCCAPQG
DMIYDPSWHHPPPLIPHYSKMVFETGQFDDAED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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