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Report for CCDS40307.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40307.1 Public Mus musculus 8 Ash2l 23 108 98 CCDS HistoryNCBI Gene:23808Re-query CCDS DB by CCDS ID:40307.1Re-query CCDS DB by GeneID:23808See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40307.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068892.14 ENSMUSP00000070957.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068892.14Link to Ensembl Protein Viewer:ENSMUSP00000070957.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068892Re-query CCDS DB by Protein ID:ENSMUSP00000070957
Original member Current member NCBI NM_011791.3 NP_035921.2 Accepted alive Link to Nucleotide Sequence:NM_011791.3Link to Protein Sequence:NP_035921.2Re-query CCDS DB by Nucleotide ID:NM_011791Re-query CCDS DB by Protein ID:NP_035921Link to BLAST:NP_035921.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035921.2 623 Q91X20 623 100% 0 0

Chromosomal Locations for CCDS 40307.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 25817401 25817508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25817604 25817663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25818546 25818644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25819626 25819718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25822695 25822888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25823139 25823306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25827174 25827391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25828766 25828859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25831273 25831348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25832640 25832735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25833751 25833846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25834960 25835054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25836000 25836088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25839743 25839888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25840012 25840075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25840582 25840757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGGCGGCGGCTGGAGCGGGTCCTGGTCCGGGAGTCAGCGCCGGCCCTGGTCCCGGAGCCGCTGCAAGTG
CCACAACGGCGGAGGACCGAGAGACAGAGCCGGTGGCCGCGGGGGCTGGCGAGGGGCCGTCAGCCGCCCC
GGGAGCGGAGCCCAGCTCCGGAGAGGCCGAAAGTGGGGATGCAAACTTGGTTGATGTAAGTGGTCTGGAG
ACAGAATCTTCTAATGGAAAAGATACTTTGGAAGGTACCGGAGACACTTCAGAAGTGATGGATACCCAGG
CGGGCTCTGTGGATGAGGAGAATGGGCGGCAGTTGGGAGAAGTGGAGTTGCAGTGTGGGATATGTACAAA
ATGGTTCACCGCTGACACCTTTGGAATAGACACGTCGTCATGTCTGCCTTTTATGACCAACTACAGCTTC
CATTGCAATGTGTGCCATCACAGTGGGAATACCTACTTTCTCCGGAAGCAAGCAAATTTAAAAGAAATGT
GCCTTAGTGCCTTGGCGAATTTGACGTGGCAGTCTCGAACACAGGATGAACATCCAAAAACCATGTTCTC
CAAAGATAAGGATATTATACCATTTATTGATAAATACTGGGAATGTATGACAACCAGACAGAGACCTGGA
AAAATGACTTGGCCCAATAACATTGTCAAAACAATGAGTAAGGAAAGAGATGTGTTCTTGGTAAAGGAAC
ACCCTGACCCAGGAAGCAAAGACCCAGAAGAAGATTACCCCAAGTTTGGACTTTTGGATCAGGATCTTAG
TAATATTGGTCCTGCTTATGACAACCAGAAACAAAGCAGTGCTGTGTCTGCTAGTGGGAACCTAAATGGG
GGGATCGCAGCCGGAAGCAGTGGGAAAGGAAGAGGAGCCAAGCGTAAGCAGCAAGATGGAGGGACAACAG
GGACCACCAAGAAGGCCAGAAGTGATCCTTTATTTTCTGCTCAGCGTCTCCCTCCTCATGGCTATCCTTT
GGAACATCCATTTAACAAAGATGGCTATCGGTATATTCTTGCTGAGCCCGATCCTCATGCCCCCGACCCG
GAGAAGCTTGAACTTGACTGCTGGGCGGGAAAGCCTATTCCTGGAGACCTTTACAGAGCCTGCTTATATG
AACGAGTCTTGTTAGCCCTACATGATCGAGCTCCCCAGTTAAAGATCTCTGATGACCGGCTGACCGTGGT
TGGAGAGAAGGGCTACTCCATGGTCCGGGCCTCTCATGGGGTACGCAAAGGGGCCTGGTACTTTGAAATC
ACTGTGGATGAGATGCCCCCAGACACTGCTGCCAGGCTGGGCTGGTCCCAGCCCTTAGGTAACCTCCAAG
CTCCCTTAGGCTATGATAAGTTTAGCTATTCTTGGCGGAGCAAGAAAGGCACCAAGTTCCACCAGTCCAT
TGGCAAGCACTATTCGTCTGGCTACGGACAAGGGGACGTCCTAGGGTTCTATATCAACCTTCCCGAAGAC
ACAGAGACAGCCAAGTCACTGCCGGACACCTACAAAGATAAGGCTTTGATAAAGTTCAAGAGTTATTTGT
ATTTTGAAGAAAAAGACTTTGTGGACAAAGCAGAGAAGAGCCTAAAACAGACCCCCCATAGTGAGATAAT
ATTTTATAAAAATGGTGTCAATCAGGGTGTGGCTTACAGAGATATTTTTGAAGGAGTTTACTTCCCAGCC
ATCTCACTGTACAAGAGCTGCACGGTTTCCATTAACTTTGGACCATCCTTCAAATACCCTCCAAAGGATC
TCACGTACCACCCTATGAGTGACATGGGCTGGGGCGCTGTGGTAGAACACACACTGGCTGATGTTTTGTA
TCACGTGGAGACAGAAGTGGACGGAAGACGTAGTCCACCCTGGGAACCCTAA

Translation (623 aa):
MAAAGAGPGPGVSAGPGPGAAASATTAEDRETEPVAAGAGEGPSAAPGAEPSSGEAESGDANLVDVSGLE
TESSNGKDTLEGTGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSF
HCNVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPG
KMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSASGNLNG
GIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRYILAEPDPHAPDP
EKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEI
TVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPED
TETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYRDIFEGVYFPA
ISLYKSCTVSINFGPSFKYPPKDLTYHPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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