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Report for CCDS40394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40394.1 Public Mus musculus 8 Prmt9 23 108 98 CCDS HistoryNCBI Gene:102182Re-query CCDS DB by CCDS ID:40394.1Re-query CCDS DB by GeneID:102182See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056237.14 ENSMUSP00000050181.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056237.14Link to Ensembl Protein Viewer:ENSMUSP00000050181.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000056237Re-query CCDS DB by Protein ID:ENSMUSP00000050181
Original member NCBI NM_001081240.3 NP_001074709.1 Updated not alive Link to Nucleotide Sequence:NM_001081240.3Link to Protein Sequence:NP_001074709.1Re-query CCDS DB by Nucleotide ID:NM_001081240Re-query CCDS DB by Protein ID:NP_001074709
Current member NCBI NM_001081240.4 NP_001074709.1 Accepted alive Link to Nucleotide Sequence:NM_001081240.4Link to Protein Sequence:NP_001074709.1Re-query CCDS DB by Nucleotide ID:NM_001081240Re-query CCDS DB by Protein ID:NP_001074709Link to BLAST:NP_001074709.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074709.1 846 Q3U3W5-1 846 99.8818% 0 1

Chromosomal Locations for CCDS 40394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 77549548 77549736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77555665 77555813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77558879 77559115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77560807 77560974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77562414 77562516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77563976 77564082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77564954 77565146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77568175 77568358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77572009 77572726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77577338 77577491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77580626 77580748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77581034 77581249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2541 nt):
ATGCCGAACTCGAGGCCCAGGCCCCGCCGGGGCGCCGGGGGTGGCGCAGGTGCGGCCGGCCGGGACCGGC
TGGTGGCACGGTCCTTGCAGAGTGCTGAGCACTGTCTAGGTGACCAGGACTTCGGCACTGCTTATGCCCA
TTACCTTCTGGTGCTCAGCCTGGCGCCAGAGCTAAAAGACGACGTGAAGGAAACTTTTCAGTATACACTT
TTCAAGTGGGCTGAAGAGCTTCATGCACTGAGCCGAATACAAGACTTACTTGGTTGCTATGAGCAGGCCT
TGGAGCTGTTTCCTGATGATGAAGTGATTTGCAACAGTATGGGAGAGCACCTCTTCAGAATGGGCTTTCG
AGATGAGGCAGCTGGCTATTTTCACAAAGCAGTGAAGCTAAACCCTGATTTCAATGATGCAAAGGAGAAC
TTTTACCGCGTAGCAAACTGGCTGGTGGAGCGCTGGCACTTCATCATGCTTAATGACACCAGGAGAAACA
TGGTTTATAATGCAGCAATCCAGAAGGCAGTGTGCCTGGGCTCCAGAACCGTTCTGGATATCGGCACGGG
GACTGGAATACTGAGCATGTTTGCTAAAAAAGCTGGCGCACAATCAGTATATGCCTGTGAATTATCCAAG
ACCATGTATGAACTCGCCTGTGATGTAGTGGCTGCAAACAAGATGGAAAATGGGATAAAGCTTCTACATA
TGAAGTCACTTGATATAGAAATTCCGAAGCACATTCCTGAAAGAGTGTCCCTAGTTGTAACAGAAACTGT
CGATGCAGGTGTATTTGGAGAAGGAATTGTGGAGAGTTTAATTCATGCATGGGAACATTTACTTCTGCAA
CCAAAGACCAAAGAAGAAAATGGAAATTGCGGGAAGTATGGGAAAGTGATACCAGCCGGTGCTGTTATAT
TTGGGATGGCAGTCGAGTGTGCAGAGATACGAAGGCATCATAGGGTTGGTGCTAAGGACATTGCTGGTAT
ACATTTACCAACAAATGTGAAATTTCAGAGCCCAGCCTATACTTCTGTTGATACAGAAGAAACAGTTGAA
CCCTACACAACTGAAAAGATGAGTGGCATCCCCGGAGGATACCTGCCTTTGACGGAGTGCTTTCAGATTA
TGAAAGTTGATTTCAATAATCTTCAGGAATTAAAAAGTCTTGCAACTAAGAAGCCACACTCTCTTAATGT
TCCTGCTATTAAAGAAGGCGTGCTAGATGCTATTATGGTTTGGTTTGTTCTCCAGCTTGATGATGAATAC
AGCTTGTCCACAAGTCCTAGTGAGGAAACCTGTTGGGAACAGGCTGTTTATCCAGTACAGGCCCTTGAAG
ACTACTGCATACAGCCTGGTGACCGAGTGACAATGGAGGCATCTTGTCACGATTGTTACCTAAGAATCCA
GGGGATCAGTATCTTGCATTTGGAACATGAAATGGAAGTTATGAAAGGTTTTACCAAGAGTAAAGACTTG
CTTTCTCTAGGAAATGAAGCTGAACTCTGTAGTGCTCTGGCTAACCTTCAGACCAGTAGACCAGAAGCCC
TGGAGCAGACTTGTATGTTAGAGCCCACAGAGATTGCTTTGCTTAATAACATTCCGTATCATGAAGGCTT
TAAGACAGCGATGAGGAAGGTGTTGTCTTCACTGGCCCCAGAGCTGCTGTGGCAGCCCATGGATACTCAC
TGTCAGTACATGGAGATGAACTCTGGGAGTGGACAGAGTGATGCTGCACCAAGCACCGCTGACCCTTTCT
ATGTGCTCGATGTGTCTGAAGGCTTCTCTCTTTTGCCTATACTTGCCGGAACACTTGGTCATGTTAAACC
CTACAGTTCAGTGGAGAAAGACCAGCATTGTATCGCTTTGGACCTCATAGCTGAAGCCAACCACTTCCCT
AAGGAAACACTTGAGTTTTGGCTGCGACATATAGAGGATGAAGCTGCTGTGTTGCAAAGGCCCAAATCAG
ACAAATTGTGGAGCATAATTATACTAGATGTCATTGAGCCATCTGGGCTTATCCAGCAGGAGCTGATGGA
AAAGGCTGCAATATCCAGATGTTTATTGCAGTCTGGAGGCAAGATCTTCCCACAGTATGTGCTGATGTTT
GGGATGCTTGTGGAGTCCCAGACGCTGGTAGAAGAGAGTGCGGTTCAAGGGACAGAACATACTCTTGGGC
TAAACATAGCACCTTTTATTAACCAGTTTCAGGTGCCTATCCGGGTATGTCTGGATTTATCTTCTTTGCC
ATGTGTCCCTTTAAGCCAACCAGTGGAGCTGTTGAGGTTGGATCTGATGACTCCATATTTGAACACTTCC
AATAAAGAAGTAAAGGTCCGTGTGTGCAGGTCTGGTCGAGTGACCGCTGTTCCATTTTGGTTTCATCTGT
GCCTGGATGACGAGGTGAGGCTGGACACCTCAGGTGAAGCCTCCCACTGGAAACAAGCTGCAGTTGTTCT
GGATAATCCCATCCAAGTACAAGCGGGAGAGGAGCTTGTGCTCAGCGTTGAGCATCACAAAAGCAACGTC
AGCATCGCAGTGAAGCCGTGA

Translation (846 aa):
MPNSRPRPRRGAGGGAGAAGRDRLVARSLQSAEHCLGDQDFGTAYAHYLLVLSLAPELKDDVKETFQYTL
FKWAEELHALSRIQDLLGCYEQALELFPDDEVICNSMGEHLFRMGFRDEAAGYFHKAVKLNPDFNDAKEN
FYRVANWLVERWHFIMLNDTRRNMVYNAAIQKAVCLGSRTVLDIGTGTGILSMFAKKAGAQSVYACELSK
TMYELACDVVAANKMENGIKLLHMKSLDIEIPKHIPERVSLVVTETVDAGVFGEGIVESLIHAWEHLLLQ
PKTKEENGNCGKYGKVIPAGAVIFGMAVECAEIRRHHRVGAKDIAGIHLPTNVKFQSPAYTSVDTEETVE
PYTTEKMSGIPGGYLPLTECFQIMKVDFNNLQELKSLATKKPHSLNVPAIKEGVLDAIMVWFVLQLDDEY
SLSTSPSEETCWEQAVYPVQALEDYCIQPGDRVTMEASCHDCYLRIQGISILHLEHEMEVMKGFTKSKDL
LSLGNEAELCSALANLQTSRPEALEQTCMLEPTEIALLNNIPYHEGFKTAMRKVLSSLAPELLWQPMDTH
CQYMEMNSGSGQSDAAPSTADPFYVLDVSEGFSLLPILAGTLGHVKPYSSVEKDQHCIALDLIAEANHFP
KETLEFWLRHIEDEAAVLQRPKSDKLWSIIILDVIEPSGLIQQELMEKAAISRCLLQSGGKIFPQYVLMF
GMLVESQTLVEESAVQGTEHTLGLNIAPFINQFQVPIRVCLDLSSLPCVPLSQPVELLRLDLMTPYLNTS
NKEVKVRVCRSGRVTAVPFWFHLCLDDEVRLDTSGEASHWKQAAVVLDNPIQVQAGEELVLSVEHHKSNV
SIAVKP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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