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Report for CCDS404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
404.1 Public Homo sapiens 1 TRAPPC3 24 110 108 CCDS HistoryNCBI Gene:27095Re-query CCDS DB by CCDS ID:404.1Re-query CCDS DB by GeneID:27095See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373166.8 ENSP00000362261.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373166.8Link to Ensembl Protein Viewer:ENSP00000362261.3Re-query CCDS DB by Nucleotide ID:ENST00000373166Re-query CCDS DB by Protein ID:ENSP00000362261
Original member Current member NCBI NM_014408.5 NP_055223.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014408.5Link to Protein Sequence:NP_055223.1Re-query CCDS DB by Nucleotide ID:NM_014408Re-query CCDS DB by Protein ID:NP_055223Link to BLAST:NP_055223.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055223.1 180 O43617-1 180 100% 0 0

Chromosomal Locations for CCDS 404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36137203 36137322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36137796 36137978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36139720 36139819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36140069 36140166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36149337 36149378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGTCGAGGCAGGCGAACCGTGGCACCGAGAGCAAGAAAATGAGCTCTGAGCTCTTCACCCTGACCTATG
GTGCCCTGGTCACCCAGCTATGTAAGGACTATGAAAATGATGAAGATGTGAATAAACAGCTGGACAAAAT
GGGCTTTAACATTGGAGTCCGGCTGATTGAAGATTTCTTGGCTCGGTCAAATGTTGGGAGGTGCCATGAC
TTTCGGGAAACTGCGGATGTCATTGCCAAGGTGGCGTTCAAGATGTACTTGGGCATCACTCCAAGCATTA
CTAATTGGAGCCCAGCTGGTGATGAATTCTCCCTCATTTTGGAAAATAACCCCTTGGTGGACTTTGTGGA
ACTTCCTGATAACCACTCATCCCTTATTTATTCCAATCTCTTGTGTGGGGTGTTGCGGGGAGCTTTGGAG
ATGGTCCAGATGGCTGTGGAGGCCAAGTTTGTCCAGGACACCCTGAAAGGAGACGGTGTGACAGAAATCC
GGATGAGATTCATCAGGCGGATTGAGGACAATCTTCCAGCTGGAGAGGAATAA

Translation (180 aa):
MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHD
FRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALE
MVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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