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Report for CCDS40423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40423.1 Public Mus musculus 8 Neto2 23 108 98 CCDS HistoryNCBI Gene:74513Re-query CCDS DB by CCDS ID:40423.1Re-query CCDS DB by GeneID:74513See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109686.3 ENSMUSP00000105308.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109686.3Link to Ensembl Protein Viewer:ENSMUSP00000105308.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109686Re-query CCDS DB by Protein ID:ENSMUSP00000105308
Original member Current member NCBI NM_001081324.2 NP_001074793.1 Accepted alive Link to Nucleotide Sequence:NM_001081324.2Link to Protein Sequence:NP_001074793.1Re-query CCDS DB by Nucleotide ID:NM_001081324Re-query CCDS DB by Protein ID:NP_001074793Link to BLAST:NP_001074793.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074793.1 553 Q8BNJ6-2 553 100% 0 0

Chromosomal Locations for CCDS 40423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85640536 85641116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85642413 85642526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85647716 85647944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85663179 85663306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85663408 85663431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85669534 85669782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85670390 85670530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85674074 85674130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85690835 85690973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGGAACAAATGCAGTGACCCACAGCCAAACATTAGGCAGAGCTTGGGGAATCCTGTGGAAGAATAAGG
ATGGAATGAGCCAGAATGATCAAGGACACCATAAGAAAACATACAGAATTAACTTACCTGGACCCATAGT
GTTGCTGATAACAGTACTTGTCGTGGAAGGGATTGCTGTGGCCCAAAAAACCCAAGATGGACAAAATATT
GGAATCAAGCACATTCCTGCAACCCAGTGTGGTATTTGGGTTCGAACCAGCAATGGAGGTCATTTTGCTT
CACCAAATTATCCTGACTCATATCCACCAAACAAGGAGTGTATCTATATTTTGGAAGCTGCTCCTCGTCA
ACGAATAGAGCTGACCTTTGATGAACGCTATTATATAGAGCCATCATTCGAATGTCGGTTTGATCACTTG
GAAATTCGAGACGGGCCATTTGGTTTTTCTCCTCTTATAGATCGTTACTGTGGCATGAAAAGCCCTGCAT
TAATTAGGTCAACGGGAAGATTCATGTGGATTAAATTTAGTTCTGATGAAGAACTTGAAGGACTAGGATT
TCGAGCAAAATACTCATTCATCCCAGATCCAGACTTTACTTACCTTGGAGATTGCCAGTTTGAGCTCTCT
GGAGCTGATGGAATAGTACGGTCTAGCCAAGTAGAGCAAGAAGAGAAAACAAAGCCTGGCCAAGCAGTTG
ATTGCATATGGACAATTAAAGCTACTCCAAAAGCTAAGATTTATTTGAGGTTCCTAGATTACCAAATGGA
ACACTCAAATGAATGCAAAAGAAATTTTGTGGCAGTCTATGATGGAAGCAGTGCTATCGAAAATCTGAAG
GCCAAGTTCTGCAGCACTGTGGCTAATGATGTCATGTTGAAAACAGGAGTCGGAGTGATCCGGATGTGGG
CAGACGAAGGCAGTCGGCTTAGCAGGTTTAGGATGCTCTTCACTTCCTTTGTGGAACCTCCCTGTACAAG
CAGCACTTTCTTTTGCCATAGCAACATGTGCATCAACAATTCTTTAGTCTGTAATGGTGTTCAAAACTGT
GCATACCCTTGGGATGAGAATCACTGTAAAGAAAAGAAAAAAGCTGGACTATTTGAACAAATCACTAAAA
CTCATGGGACAATTATTGGCATTACATCAGGAATTGTCTTGGTCCTTCTCATTATTTCTATTTTAGTACA
AGTGAAACAGCCCCGGAAAAAGGTTATGGCTTGCAAAACTGCATTTAATAAAACTGGGTTCCAGGAAGTA
TTTGATCCTCCTCATTATGAACTATTTTCACTAAGAGAGAAAGAGATTTCTGCAGATCTGGCAGATTTGT
CAGAAGAACTTGACAACTACCAGAAGTTGCGGCGCTCCTCCACGGCCTCCCGGTGCATTCACGACCACCA
CTGTGGATCACAAGCATCCAGTGTGAAACAAAGCAGGACCAACCTCAGTTCCATGGAACTTCCCTTCCGA
AATGATTTTGCACAACCACAGCCAATGAAAACATTTAATAGCACCTTCAAAAAAAGCAGCTACACTTTCA
AACAAGCTCATGAGTGCCCTGAACAGGCTCTAGAGGACAGAGTGATGGAGGAGATTCCCTGTGAAATTTA
TGTCAGAGGGCGAGACGATTCTGCACAAGCATCCATATCCATCGACTTTTAA

Translation (553 aa):
MGTNAVTHSQTLGRAWGILWKNKDGMSQNDQGHHKKTYRINLPGPIVLLITVLVVEGIAVAQKTQDGQNI
GIKHIPATQCGIWVRTSNGGHFASPNYPDSYPPNKECIYILEAAPRQRIELTFDERYYIEPSFECRFDHL
EIRDGPFGFSPLIDRYCGMKSPALIRSTGRFMWIKFSSDEELEGLGFRAKYSFIPDPDFTYLGDCQFELS
GADGIVRSSQVEQEEKTKPGQAVDCIWTIKATPKAKIYLRFLDYQMEHSNECKRNFVAVYDGSSAIENLK
AKFCSTVANDVMLKTGVGVIRMWADEGSRLSRFRMLFTSFVEPPCTSSTFFCHSNMCINNSLVCNGVQNC
AYPWDENHCKEKKKAGLFEQITKTHGTIIGITSGIVLVLLIISILVQVKQPRKKVMACKTAFNKTGFQEV
FDPPHYELFSLREKEISADLADLSEELDNYQKLRRSSTASRCIHDHHCGSQASSVKQSRTNLSSMELPFR
NDFAQPQPMKTFNSTFKKSSYTFKQAHECPEQALEDRVMEEIPCEIYVRGRDDSAQASISIDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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