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Report for CCDS40599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40599.1 Public Mus musculus 9 Vps11 23 108 98 CCDS HistoryNCBI Gene:71732Re-query CCDS DB by CCDS ID:40599.1Re-query CCDS DB by GeneID:71732See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034644.9 ENSMUSP00000034644.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034644.9Link to Ensembl Protein Viewer:ENSMUSP00000034644.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034644Re-query CCDS DB by Protein ID:ENSMUSP00000034644
Original member Current member NCBI NM_027889.2 NP_082165.1 Accepted alive Link to Nucleotide Sequence:NM_027889.2Link to Protein Sequence:NP_082165.1Re-query CCDS DB by Nucleotide ID:NM_027889Re-query CCDS DB by Protein ID:NP_082165Link to BLAST:NP_082165.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082165.1 941 Q91W86 941 100% 0 0

Chromosomal Locations for CCDS 40599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44348420 44348584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44348903 44349125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44352597 44352768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44352909 44353111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44353215 44353354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44353837 44353998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44354103 44354291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44354409 44354555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44354964 44355150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44355699 44355850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44356228 44356429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44358069 44358316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44359138 44359301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44359612 44359747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44359839 44359987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44361445 44361631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2826 nt):
ATGGCGGCCTACCTGCAGTGGCGGCGTTTCGTTTTCTTCGAGAAGGAGCTGGTGAAGGAGCCGCTGGGTA
ATGATGGGGCTGCTCCCGGTGCCGCGCCTGTGTCGGGATCCGCTGCTTCCAAGTTCCTTTGCCTCCCTCC
TGGCATCACTGTCTGCGACTCAGGCCGCGGGAGCCTGGTCTTTGGAGATATGGAAGGCCAGATCTGGTTC
TTGCCACGTTCTCTACAGCTTACAGGGTTCCAGGCCTACAAACTACGGGTGACACACTTATATCAGCTGA
AGCAGCACAATATTCTGGCATCGGTTGGTGAGGATGAAGAGGGTATTAACCCTCTGGTAAAGATCTGGAA
CCTGGAAAAGAGAGACGGTGGCAATCCACTCTGCACCCGGATTTTCCCTGCCATCCCAGGGACAGAGCCA
ACTGTTGTGTCTTGTTTGACGGTCCATGAGAATCTCAACTTTATGGCCATTGGGTTCACAGATGGCAGTG
TCACCCTGAACAAGGGAGATATTACCCGGGACCGGCACAGCAAGACGCAGATTTTGCACAAGGGCAACTA
TCCCGTTACTGGGCTGGCCTTTCGCCAAGCAGGAAAGACCACCCACTTGTTTGTCGTGACAACTGAAAAT
GTTCAGTCTTATATAGTTTCTGGAAAGGACTACCCTCGTGTGGAGTTGGACACCCATGGTTGTGGCCTGC
GCTGTTCAGCCCTGAGCGACCCTTCTCAAGACCTGCAGTTCATTGTTGCTGGGGATGAGTGTGTCTACCT
TTACCAGCCTGATGAACGTGGACCCTGCTTTGCCTTTGAGGGCCATAAGCTCATCGTGCACTGGTTTAGA
GGCTACCTTGTCATTGTCTCCCGTGACCGGAAAGTTTCTCCCAAGTCCGAGTTTACCAGCAGGGACTCAC
AGAACTCCGACAAGCAGATTCTCAACATCTATGACCTGTGCAACAAGTTCATAGCCTACAGCGCTGGGTT
TGAGGATATAGTGGATGTGCTGGCTGAGTGGGGCTCCTTGTACGTGCTGACGCGGGATGGGCGGGTCCAC
GCATTGCAGGAGAAGGACACACAGACCAAACTGGAGATGCTGTTTAAGAAGAATCTATTTGAGATGGCAA
TTAATCTGGCTAAGAGTCAACATTTGGACAGTGATGGGTTGGCTCAAATCTTCATGCAGTATGGAGACCA
TCTCTACAGCAAGGGCAACCATGATGGGGCTGTGCAGCAGTATATCCGAACCATTGGAAAGTTGGAGCCA
TCCTATGTGATCCGGAAGTTTCTGGATGCCCAGCGCATCCACAACTTGACCGCCTACCTGCAAACCCTGC
ATCGGCAGTCTCTGGCTAATGCTGATCATACCACCCTGCTTCTGAACTGCTATACCAAGCTCAAGGACAG
CTCGAAGCTGGAGGAATTCATCAAGACAAAGAGTGAGAGTGAAGTCCACTTTGATGTAGAGACAGCCATC
AAGGTCCTCCGGCAGGCTGGCTACTACTCCCATGCCCTCTATCTGGCTGAGAATCATGCACATCATGAGT
GGTACTTGAAGATCCAGCTAGAGGACATTAAGAACTATCAGGAAGCCCTTCGGTATATCGGGAAGCTGCC
TTTCGAGCAAGCGGAGAGTAACATGAAACGCTATGGCAAGACCCTCATGCACCACATACCGGAGCAGACA
ACCCAGTTGCTGAAAGGCCTCTGCACTGACTATCGACCCAGTCTGGAAGGCCGAGGCGATCGGGAGGCTC
TGAGCTGCCGGGCCAGTTCTGAGGAGTTCATCCCCATCTTTGCCAACAACCCACGAGAGCTGAAAGCCTT
CCTAGAACACATGAGTGAGGTGCAGCCGGACTCACCGCAGGGCATCTATGACACGCTCCTGGAGCTGCGG
CTGCAGAACTGGGCCCATGAGAAAGATCCCCAGGCCAAGGAGAAACTTCATGCAGAGGCCATCTCCCTGC
TGAAGAGTGGCCGATTCTGTGACGTGTTTGACAAGGCATTGGTTCTGTGCCAGATGCACGACTTCCAGGA
TGGGGTCCTTTACCTCTATGAGCAGGGGAAGCTGTTCCAGCAGATCATGCATTACCACATGCAGCACGAG
CAGTACCGGCAGGTGATTGCCGTGTGTGAGCGCCATGGAGAGCAGGAGCCCTCCCTGTGGGAACAGGCCC
TCAGCTACTTCGCCCGCAAGGAGGAGGACTGCAAGGAGTATGTGGCGGCTGTGCTCAGGCACATTGAGAA
CAAGAGCCTCATGCCGCCTCTTCTAGTGGTGCAGACCCTGGCCCACAACTCCACAGCTACCCTGTCTATC
ATCCGAGATTACCTGGTCCAAAAACTGCAGAAACAGAGCCAGCAGATTGCACAGGATGAGCTCCGGGTGC
GGCGATACAGAGAGGAGACCACTCGCATCCGCCAGGAAATCCAGGAGCTCAAGGCGAGTCCAAAGATTTT
CCAGAAGACCAAGTGTAGCATCTGTAACAGTGCCTTGGAGCTGCCCTCAGTCCACTTCCTGTGTGGCCAC
TCCTTCCACCAACACTGCTTTGAGAGTTACTCAGAAAGTGATGCTGACTGCCCCACCTGCCTCCCTGAGA
ACCGCAAGGTGATGGATATGATCCGGGCCCAGGAACAGAAACGAGATCTCCACGATCAGTTCCAACATCA
GCTCAAGTGCTCGAATGACAGCTTCTCTGTGATTGCGGACTACTTTGGCCGAGGGGTTTTCAACAAGTTG
ACTCTGCTGACCGACCCTCCTACAGCCAGACTGACCCCCAGCCTGGAGGCTGGACTGCAGCGGGACCTGC
TGATGCACTCCAGGAGGGGAACTTAG

Translation (941 aa):
MAAYLQWRRFVFFEKELVKEPLGNDGAAPGAAPVSGSAASKFLCLPPGITVCDSGRGSLVFGDMEGQIWF
LPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEKRDGGNPLCTRIFPAIPGTEP
TVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKTQILHKGNYPVTGLAFRQAGKTTHLFVVTTEN
VQSYIVSGKDYPRVELDTHGCGLRCSALSDPSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIVHWFR
GYLVIVSRDRKVSPKSEFTSRDSQNSDKQILNIYDLCNKFIAYSAGFEDIVDVLAEWGSLYVLTRDGRVH
ALQEKDTQTKLEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEP
SYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKTKSESEVHFDVETAI
KVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKLPFEQAESNMKRYGKTLMHHIPEQT
TQLLKGLCTDYRPSLEGRGDREALSCRASSEEFIPIFANNPRELKAFLEHMSEVQPDSPQGIYDTLLELR
LQNWAHEKDPQAKEKLHAEAISLLKSGRFCDVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHE
QYRQVIAVCERHGEQEPSLWEQALSYFARKEEDCKEYVAAVLRHIENKSLMPPLLVVQTLAHNSTATLSI
IRDYLVQKLQKQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGH
SFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIADYFGRGVFNKL
TLLTDPPTARLTPSLEAGLQRDLLMHSRRGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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