NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40658.1 Public Mus musculus 9 Bbs4 23 108 98 CCDS HistoryNCBI Gene:102774Re-query CCDS DB by CCDS ID:40658.1Re-query CCDS DB by GeneID:102774See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40658.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026265.7 ENSMUSP00000026265.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026265.7Link to Ensembl Protein Viewer:ENSMUSP00000026265.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026265Re-query CCDS DB by Protein ID:ENSMUSP00000026265
Original member NCBI NM_175325.3 NP_780534.1 Updated not alive Link to Nucleotide Sequence:NM_175325.3Link to Protein Sequence:NP_780534.1Re-query CCDS DB by Nucleotide ID:NM_175325Re-query CCDS DB by Protein ID:NP_780534
Current member NCBI NM_175325.4 NP_780534.1 Accepted alive Link to Nucleotide Sequence:NM_175325.4Link to Protein Sequence:NP_780534.1Re-query CCDS DB by Nucleotide ID:NM_175325Re-query CCDS DB by Protein ID:NP_780534Link to BLAST:NP_780534.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780534.1 520 Q8C1Z7 520 100% 0 0

Chromosomal Locations for CCDS 40658.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 59322870 59322982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59323388 59323589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59324037 59324178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59324790 59324859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59327187 59327358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59327456 59327608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59328580 59328648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59330418 59330472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59333480 59333607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59336364 59336417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59339811 59339883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59341087 59341198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59342488 59342551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59344060 59344139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59345800 59345851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59353410 59353433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCTGAAGTGAAGCTTGGGATGAAAACTCAGGTTCCTGCATCTGTTGAATCTCAAAAACCTAGGTCAA
AAAAAGCTCCAGACTTCCCTATTGTGGAGAAACAGAACTGGCTGATCCATCTCCACTATATCCGGAAGGA
TTATGAAGCTTGCAAGGCTGTGATCAAAGAACAGCTTCAGGAGACTCAGGGGCTATGTGAATATGCTATC
TATGTCCAAGCACTGATTTTTCGCCTGGAAGGAAATATCCAAGAATCCCTAGAACTCTTTCAGACATGTG
CTGTTCTCAGCCCACAGTGTGCTGATAATCTCAAGCAGGTGGCCAGATCTTTGTTTCTTCTGGGAAAACA
CAAAGCTGCCACTGAAGTATATAATGAAGCAGCTAAACTTAACCAGAAAGACTGGGAGATCTGCCATAAC
CTGGGAGTGTGCTACACTTACCTGAAGCAGTTCAACAAGGCACAAGACCAACTGCACAGTGCCCTCCAGC
TTAACAAGCATGACCTGACTTACATAATGTTGGGGAAGATCCATTTACTGCAGGGAGACCTGGATAAAGC
CATCGAGATCTACAAGAAAGCAGTAGAGTTCTCACCAGAAAATACTGAACTTCTTACAACTTTAGGATTG
CTCTACTTGCAGCTTGGTGTGTACCAGAAGGCATTTGAACATCTTGGGAATGCACTGACCTACGACCCTG
CCAACTACAAGGCCATCTTGGCAGCAGGCAGCATGATGCAGACTCATGGGGACTTTGATGTCGCCCTTAC
CAAATACAGAGTTGTAGCCTGTGCTATTCCAGAAAGTCCTCCACTTTGGAATAACATTGGAATGTGTTTC
TTTGGCAAGAAGAAATATGTGGCAGCTATCAGCTGCCTAAAACGAGCCAACTACTTGGCACCCTTCGACT
GGAAGATTCTGTACAACCTGGGCCTTGTCCATTTGACTATGCAGCAGTATGCATCAGCATTCCATTTTCT
CAGTGCAGCCATCAACTTCCAGCCAAAGATGGGGGAACTCTACATGCTCTTGGCTGTGGCTCTGACCAAC
CTGGAAGATATAGAGAATGCCAGAAGAGCTTATGTAGAAGCTGTTCGCCTGGATAAGTGTAACCCTTTAG
TAAACCTGAACTATGCTGTGCTGCTGTATAACCAGGGTGAGAAGAAGAGCGCCCTGGCTCAGTACCAGGA
GATGGAGAAGAAGGTCAACTTTCTCAAGGACAACAGCCCTCTGGAATTTGACTCTGAGATGGTAGAGATG
GCTCAGAAGTTGGGAGCTGCCCTTCAGGTGGGAGAGGCACTGGTCTGGACCAAACCAGTCAAAGATCCCA
AGACAAAGCACCGGACCAATTCAGGCAGCAAATCTGCTACTCTCCAGCAGCCTCTGGGTTCCATTCAAGC
TCTAGGACAGGCGATGTCTTCAGCAGCTGCATACAGAAAGATCCTTTCAGGTGCTGTAGGAGCCCAGCTC
CCAAAGCCACCATCACTGCCACTGGAGCCAGAGCCAGAGCCCACTGTGGAAGCAAGTCCAACAGAAGCAT
CAGAACAAAAGAAAGAAAAATAG

Translation (520 aa):
MAEVKLGMKTQVPASVESQKPRSKKAPDFPIVEKQNWLIHLHYIRKDYEACKAVIKEQLQETQGLCEYAI
YVQALIFRLEGNIQESLELFQTCAVLSPQCADNLKQVARSLFLLGKHKAATEVYNEAAKLNQKDWEICHN
LGVCYTYLKQFNKAQDQLHSALQLNKHDLTYIMLGKIHLLQGDLDKAIEIYKKAVEFSPENTELLTTLGL
LYLQLGVYQKAFEHLGNALTYDPANYKAILAAGSMMQTHGDFDVALTKYRVVACAIPESPPLWNNIGMCF
FGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTN
LEDIENARRAYVEAVRLDKCNPLVNLNYAVLLYNQGEKKSALAQYQEMEKKVNFLKDNSPLEFDSEMVEM
AQKLGAALQVGEALVWTKPVKDPKTKHRTNSGSKSATLQQPLGSIQALGQAMSSAAAYRKILSGAVGAQL
PKPPSLPLEPEPEPTVEASPTEASEQKKEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH