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Report for CCDS40745.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40745.1 Public Mus musculus 9 Amotl2 23 108 98 CCDS HistoryNCBI Gene:56332Re-query CCDS DB by CCDS ID:40745.1Re-query CCDS DB by GeneID:56332See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40745.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035121.13 ENSMUSP00000035121.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035121.13Link to Ensembl Protein Viewer:ENSMUSP00000035121.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035121Re-query CCDS DB by Protein ID:ENSMUSP00000035121
Original member Current member NCBI NM_019764.2 NP_062738.2 Accepted alive Link to Nucleotide Sequence:NM_019764.2Link to Protein Sequence:NP_062738.2Re-query CCDS DB by Nucleotide ID:NM_019764Re-query CCDS DB by Protein ID:NP_062738Link to BLAST:NP_062738.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062738.2 772 Q8K371 772 100% 0 0

Chromosomal Locations for CCDS 40745.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 102720143 102720876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102723569 102723863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102724687 102724831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102725103 102725195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102728317 102728612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102729268 102729578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102729968 102730176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102730793 102730969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 102731648 102731706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2319 nt):
ATGAGGACACTGGAAGACTCCTCAGGGACAGTCCTGCACCGTCTCATCCAAGAGCAGCTGCGCTACGGCA
ACCTGACAGAGACTCGCACTCTGCTGGCTATCCAGCAGCAGGCCCTGCGGGGTGGGGCTGGAGCTGGGGG
CACGGGGAGCCCCCAGGCTTCCTTGGAGATCGGAGCACCCGAGGACAGTCAGGTGCTGCAGCAAGCCACC
AGGCAGGAGCCCCAGGGCCAGGAGCATCAGGGTGGAGAGACCCACCTGGCAGAGAACAGGCTGTACCGGC
TGTGCCCACAGCCCAGCAAAGGAGAAGAGTTGCCCACCTATGAGGAGGCCAAAGCCCATTCGCAGTACTA
CGCAGCGCAGCAGGCAGGGTCCCGGCCGCATGTTGGGGACCGGGATCCTAGAGGAGGGGTGTCCGGAGGC
GGCCGGCGACAGGATGAAGCTCTTCGAGAGCTGAGGCATGGCCATGTGCGCTCCTTGAGTGAACGGCTTC
TGCAACTGTCCCTGGAAAGAAACGGTGCTCGGGTCCCCAGCCACATGAGCTCTTCCCACAGCTTCCCTCA
GCTGGCCCGCAGCCAGCAGGGCCCCCAACCCCGAGGGCCCCCAGCTGAGGGCCCAGAGCCCCGCGGGCCA
CCACCTCAGTACCCACACGCTGTAATGGCTCAGGAGACTGCGGCTGTCACTGACCCAAGATACCGACCCC
GAAGCAGCCCACACTTCCAGCATGCCGAAGTCAGGATCCTGCAGGCCCAGGTACCACCGGTGTTCCTCCA
GCAGCAGCAGTACCAGTACCTGCCACAGCCCCAGGAGCACTCTCCACCCCTCCACCCGGCAGCTCTGGGC
CATGGACCCCCAAGCTCCTTTGGTCCACCTGCAGTGGAGGGACCACCCAGTGCCCAGGCCACCTTGGGCA
GTGCCCACCTGGCCCAGATGGAGACTGTACTGAGGGAGAATGCCAGGCTGCAGAGGGACAATGAGCGATT
GCAGAGAGAGCTGGAGAGCACTTCAGAGAAGGCTGGCCGCATAGAAAAGCTGGAAAATGAAATCCAGCGG
CTCTCTGAGGCCCACGAGAGCCTGATGAGGACCTCTTCCAAGCGTGAGGCCCTGGAGAAGACCATGAGGA
ACAAGATGGACGGTGAGATGAGACGGTTGCAGGACTTCAACCGAGACCTTAGAGAGAGATTGGAATCGGC
AAACCGCCACCTGGCAAGCAAGACCCAGGAAGCCCAGGCGGGCAGTCAGGACATGGTGGCGAAACTGCTT
GCCCAGAGCTATGAGCAGCAACAGGAACAGGAGAAGCTGGAGCGGGAGATGGCACTGCTGCGTGGTGCCA
TCGAGGACCAGCGGCGACATGCTGAACTGCTGGAGCAGGCTCTGGGCAATGCACAAAGCCGTGCCGCCCG
GGCTGAAGAGGAGCTACGCAAAAAGCAGGCCTATGTGGAGAAGGTGGAGCGGCTGCAGCAGGCACTGGGG
CAGTTGCAGGCTGCCTGTGAAAAGCGAGAGCAGTTGGAGCTGCGTCTGCGCACGCGCCTGGAGCAGGAAC
TCAAAGCCTTGCGTGCACAGCAGAGGCAGACAGGCACCCTCGCAGGTGGTGGCGGCAGCCATGGTGGGTC
CGCCGAGCTCAGTGCCCTGCGGCTGTCTGAACAGCTGCGGGAGAAGGAGGAACAGATCCTGGCTCTAGAG
GCGGACATGACCAAGTGGGAACAGAAGTATTTGGAAGAACGGGCTATGAGGCAGTTCGCCATGGACGCGG
CTGCCACTGCGGCTGCCCAGCGCGATACCACTCTCATCCGGCACTCCCCCCAGCCCTCGCCCAGCAGCAG
TTTCAACGAGGGCCTGCTGCCAGGCAACCACAGGCACCAGGAGATGGAGAGCAGATTGAAGGTGCTCCAT
GCTCAGATCCTAGAGAAGGATGCGGTGATCAAGGTCCTTCAGCAGCGCTCCAGGAAAGACCCTGGCAAGG
CCACCCAGGGCACCCTACGGCCTGCCAAGTCGGTGCCGTCCATCTTCGCGGCTGCAGTGGGAACTCAGGG
CTGGCAAGGGCTCGTATCCAGTGAGCGGCAAACTGATGCACGGCCAGCGGGAGACCGGGTCCCAGCAGAG
GAGCCTCCGGCCACAGCTCCTCTCCCTGCCCACACCAAACATGGCAGCAGAGACGGGAGCACCCAGACGG
ATGGCCCTGCAGACAACACCTCTGCCTGCTTGGCCTCAGAACCCGATGGCCTCCTGGGGTGCAACAGTAG
CCAGAGGACACCCTCTCTGGACTCTATAGCTGCAACCAGAGTCCAGGATCTGTCAGACATGGTAGAAATA
CTGATCTGA

Translation (772 aa):
MRTLEDSSGTVLHRLIQEQLRYGNLTETRTLLAIQQQALRGGAGAGGTGSPQASLEIGAPEDSQVLQQAT
RQEPQGQEHQGGETHLAENRLYRLCPQPSKGEELPTYEEAKAHSQYYAAQQAGSRPHVGDRDPRGGVSGG
GRRQDEALRELRHGHVRSLSERLLQLSLERNGARVPSHMSSSHSFPQLARSQQGPQPRGPPAEGPEPRGP
PPQYPHAVMAQETAAVTDPRYRPRSSPHFQHAEVRILQAQVPPVFLQQQQYQYLPQPQEHSPPLHPAALG
HGPPSSFGPPAVEGPPSAQATLGSAHLAQMETVLRENARLQRDNERLQRELESTSEKAGRIEKLENEIQR
LSEAHESLMRTSSKREALEKTMRNKMDGEMRRLQDFNRDLRERLESANRHLASKTQEAQAGSQDMVAKLL
AQSYEQQQEQEKLEREMALLRGAIEDQRRHAELLEQALGNAQSRAARAEEELRKKQAYVEKVERLQQALG
QLQAACEKREQLELRLRTRLEQELKALRAQQRQTGTLAGGGGSHGGSAELSALRLSEQLREKEEQILALE
ADMTKWEQKYLEERAMRQFAMDAAATAAAQRDTTLIRHSPQPSPSSSFNEGLLPGNHRHQEMESRLKVLH
AQILEKDAVIKVLQQRSRKDPGKATQGTLRPAKSVPSIFAAAVGTQGWQGLVSSERQTDARPAGDRVPAE
EPPATAPLPAHTKHGSRDGSTQTDGPADNTSACLASEPDGLLGCNSSQRTPSLDSIAATRVQDLSDMVEI
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 Re-query CCDS DB by:   CCDS ID
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