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Report for CCDS40761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40761.1 Public Mus musculus 9 Cish 23 108 98 CCDS HistoryNCBI Gene:12700Re-query CCDS DB by CCDS ID:40761.1Re-query CCDS DB by GeneID:12700See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085102.5 ENSMUSP00000082183.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085102.5Link to Ensembl Protein Viewer:ENSMUSP00000082183.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085102Re-query CCDS DB by Protein ID:ENSMUSP00000082183
Original member Current member NCBI NM_009895.4 NP_034025.1 Accepted alive Link to Nucleotide Sequence:NM_009895.4Link to Protein Sequence:NP_034025.1Re-query CCDS DB by Nucleotide ID:NM_009895Re-query CCDS DB by Protein ID:NP_034025Link to BLAST:NP_034025.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034025.1 257 Q62225 257 100% 0 0

Chromosomal Locations for CCDS 40761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107297015 107297034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107299924 107300144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107300368 107300900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGTCCTTTGCGTACAGGGATCTTGTCCTTTGCTGGCTGTGGAGCAAATTGGGCGGCGGCCTCTGTGGG
CCCAGTCCCTGGAGCTGCCCGGGCCAGCCATGCAGCCCTTACCCACTGGGGCATTCCCAGAGGAAGTGAC
AGAGGAGACCCCTGTCCAGGCAGAGAATGAACCGAAGGTGCTAGACCCTGAGGGGGATCTGCTGTGCATA
GCCAAGACGTTCTCCTACCTTCGGGAATCTGGGTGGTACTGGGGTTCTATTACAGCCAGCGAGGCCCGGC
AGCACCTACAGAAGATGCCGGAGGGTACATTCCTAGTTCGAGACAGCACCCACCCCAGCTACCTGTTCAC
ACTGTCAGTCAAAACCACCCGTGGCCCCACCAACGTGCGGATCGAGTACGCCGATTCTAGCTTCCGGCTG
GACTCTAACTGCTTGTCAAGACCTCGAATCCTGGCCTTCCCAGATGTGGTCAGCCTTGTGCAGCACTATG
TGGCCTCCTGTGCAGCTGACACCCGGAGCGACAGCCCGGATCCTGCTCCCACCCCAGCCCTGCCTATGTC
TAAGCAAGATGCACCTAGTGACTCGGTGCTGCCTATCCCCGTGGCTACTGCAGTGCACCTGAAACTGGTG
CAGCCCTTTGTGCGCAGGAGCAGCGCCCGCAGCTTACAACATCTGTGTCGGCTAGTCATCAACCGTCTGG
TGGCCGACGTGGACTGCCTACCCCTGCCCCGGCGTATGGCCGACTACCTCCGACAGTACCCCTTCCAACT
CTGA

Translation (257 aa):
MVLCVQGSCPLLAVEQIGRRPLWAQSLELPGPAMQPLPTGAFPEEVTEETPVQAENEPKVLDPEGDLLCI
AKTFSYLRESGWYWGSITASEARQHLQKMPEGTFLVRDSTHPSYLFTLSVKTTRGPTNVRIEYADSSFRL
DSNCLSRPRILAFPDVVSLVQHYVASCAADTRSDSPDPAPTPALPMSKQDAPSDSVLPIPVATAVHLKLV
QPFVRRSSARSLQHLCRLVINRLVADVDCLPLPRRMADYLRQYPFQL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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