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Report for CCDS4077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4077.1 Public Homo sapiens 5 RHOBTB3 24 110 108 CCDS HistoryNCBI Gene:22836Re-query CCDS DB by CCDS ID:4077.1Re-query CCDS DB by GeneID:22836See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4077.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379982.8 ENSP00000369318.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379982.8Link to Ensembl Protein Viewer:ENSP00000369318.3Re-query CCDS DB by Nucleotide ID:ENST00000379982Re-query CCDS DB by Protein ID:ENSP00000369318
Original member Current member NCBI NM_014899.4 NP_055714.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014899.4Link to Protein Sequence:NP_055714.3Re-query CCDS DB by Nucleotide ID:NM_014899Re-query CCDS DB by Protein ID:NP_055714Link to BLAST:NP_055714.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055714.3 611 O94955 611 100% 0 0

Chromosomal Locations for CCDS 4077.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 95731683 95731684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95731859 95732084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95736889 95737075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95748333 95748487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95752239 95752350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95755396 95755761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95763508 95763620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95768046 95768166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95780252 95780425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95783797 95783963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95788762 95788858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95793059 95793174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGTCCATCCACATCGTGGCGCTGGGGAACGAGGGGGACACATTCCACCAGGACAACCGGCCGTCGGGGC
TTATCCGCACTTACCTGGGGAGAAGCCCTCTGGTCTCCGGGGACGAGAGCAGCTTGTTGCTGAACGCGGC
CAGCACGGTCGCGCGTCCGGTGTTCACCGAGTATCAGGCCAGTGCGTTTGGGAATGTCAAGCTGGTGGTC
CACGACTGTCCCGTCTGGGACATATTTGACAGTGATTGGTACACTTCTCGAAATCTAATTGGGGGCGCTG
ACATCATTGTGATCAAATACAACGTTAATGACAAGTTTTCATTCCATGAAGTAAAGGATAATTATATTCC
AGTGATAAAAAGAGCATTAAATTCAGTTCCAGTAATTATTGCTGCTGTTGGTACCAGACAAAATGAAGAG
TTACCTTGTACATGCCCACTATGTACCTCAGACAGAGGGAGCTGTGTTAGTACAACTGAAGGGATCCAAC
TTGCAAAAGAACTAGGAGCGACCTATCTTGAACTCCACAGCCTTGATGACTTCTACATAGGAAAGTATTT
TGGAGGAGTGTTGGAGTATTTTATGATTCAAGCCTTAAATCAGAAGACAAGTGAAAAAATGAAGAAAAGA
AAAATGAGCAACTCCTTTCATGGAATTAGACCACCTCAACTTGAACAACCAGAAAAAATGCCTGTCTTAA
AGGCTGAAGCGTCACATTATAACTCTGACTTAAATAACTTGCTGTTCTGCTGCCAGTGTGTGGACGTGGT
ATTTTACAACCCCAATTTAAAGAAAGTTGTAGAGGCCCACAAGATCGTTCTCTGCGCTGTAAGCCATGTT
TTCATGCTGCTTTTCAATGTGAAGAGTCCCACTGACATTCAGGATTCCAGTATCATCCGAACTACCCAGG
ATCTTTTTGCTATAAACAGAGATACTGCATTTCCAGGTGCTAGCCATGAATCTTCAGGCAACCCACCATT
ACGAGTCATTGTTAAAGACGCCCTCTTCTGTTCTTGTTTATCAGACATCCTTCGCTTCATTTATTCAGGT
GCTTTTCAGTGGGAAGAATTGGAAGAAGATATCAGGAAGAAGTTGAAAGATTCTGGGGATGTTTCAAATG
TAATCGAGAAAGTTAAATGCATTTTAAAAACACCAGGAAAGATTAATTGCCTAAGGAATTGCAAAACCTA
TCAAGCCAGAAAACCTTTGTGGTTTTATAACACTTCCCTCAAGTTTTTCCTTAATAAGCCGATGCTTGCC
GATGTTGTCTTCGAAATTCAAGGTACGACAGTGCCAGCCCACAGGGCCATCCTGGTGGCCCGTTGTGAAG
TGATGGCAGCCATGTTTAATGGTAATTACATGGAAGCAAAGAGTGTCCTGATTCCCGTTTATGGTGTTTC
CAAAGAGACTTTCTTGTCATTTTTAGAATACCTGTACACAGACTCCTGCTGCCCAGCTGGCATATTCCAG
GCCATGTGTCTCCTGATCTGTGCCGAGATGTACCAAGTGTCCAGACTGCAGCACATCTGTGAGCTGTTCA
TCATTACCCAGCTGCAGAGCATGCCAAGCAGGGAACTGGCATCCATGAACCTTGATATAGTTGACCTGCT
TAAAAAGGCCAAGTTTCACCACTCTGATTGCCTTTCAACCTGGCTACTTCATTTCATTGCTACTAACTAC
CTCATCTTCAGTCAAAAGCCTGAATTTCAGGATCTTTCAGTGGAAGAACGCAGTTTTGTTGAAAAGCACA
GATGGCCGTCGAATATGTACTTGAAGCAGCTTGCGGAATACAGGAAGTATATTCACTCCCGGAAATGTCG
TTGCTTAGTAATGTAA

Translation (611 aa):
MSIHIVALGNEGDTFHQDNRPSGLIRTYLGRSPLVSGDESSLLLNAASTVARPVFTEYQASAFGNVKLVV
HDCPVWDIFDSDWYTSRNLIGGADIIVIKYNVNDKFSFHEVKDNYIPVIKRALNSVPVIIAAVGTRQNEE
LPCTCPLCTSDRGSCVSTTEGIQLAKELGATYLELHSLDDFYIGKYFGGVLEYFMIQALNQKTSEKMKKR
KMSNSFHGIRPPQLEQPEKMPVLKAEASHYNSDLNNLLFCCQCVDVVFYNPNLKKVVEAHKIVLCAVSHV
FMLLFNVKSPTDIQDSSIIRTTQDLFAINRDTAFPGASHESSGNPPLRVIVKDALFCSCLSDILRFIYSG
AFQWEELEEDIRKKLKDSGDVSNVIEKVKCILKTPGKINCLRNCKTYQARKPLWFYNTSLKFFLNKPMLA
DVVFEIQGTTVPAHRAILVARCEVMAAMFNGNYMEAKSVLIPVYGVSKETFLSFLEYLYTDSCCPAGIFQ
AMCLLICAEMYQVSRLQHICELFIITQLQSMPSRELASMNLDIVDLLKKAKFHHSDCLSTWLLHFIATNY
LIFSQKPEFQDLSVEERSFVEKHRWPSNMYLKQLAEYRKYIHSRKCRCLVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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