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Report for CCDS40815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40815.1 Public Mus musculus 9 Exosc7 23 108 98 CCDS HistoryNCBI Gene:66446Re-query CCDS DB by CCDS ID:40815.1Re-query CCDS DB by GeneID:66446See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026891.4 ENSMUSP00000026891.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026891.4Link to Ensembl Protein Viewer:ENSMUSP00000026891.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026891Re-query CCDS DB by Protein ID:ENSMUSP00000026891
Original member NCBI NM_001081188.1 NP_001074657.1 Updated not alive Link to Nucleotide Sequence:NM_001081188.1Link to Protein Sequence:NP_001074657.1Re-query CCDS DB by Nucleotide ID:NM_001081188Re-query CCDS DB by Protein ID:NP_001074657
Current member NCBI NM_001081188.2 NP_001074657.1 Accepted alive Link to Nucleotide Sequence:NM_001081188.2Link to Protein Sequence:NP_001074657.1Re-query CCDS DB by Nucleotide ID:NM_001081188Re-query CCDS DB by Protein ID:NP_001074657Link to BLAST:NP_001074657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074657.1 291 Q9D0M0 291 100% 0 0

Chromosomal Locations for CCDS 40815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123113266 123113322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123118891 123118992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123119241 123119335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123127806 123127971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123130524 123130594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123130827 123130950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123131885 123132040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123135899 123136003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGCGTCGGTGGCGCTAAGCGAGGCCGAGAAGGTCTACATCGTTCATGGAGTGCAGGAAGACCTTCGGG
TGGATGGCCGTGGCTGTGAGGACTACCGATGTGTTGAAGTAGAGACTGATGTGGTGTCTAACACCAGTGG
GTCTGCCAGAGTCAAGCTGGGTCACACAGACATCTTGGTGGGAGTGAAAGCAGAAATGGGGACACCGAAG
CTGGAGAAACCGAATGAAGGCTACCTGGAGTTCTTTGTTGACTGTTCAGCCAATGCTACCCCAGAATTCG
AAGGGCGAGGAGGTGATGACCTTGGCACAGAGATTGCTAACACCCTCTACCGGATATTTAACAACAAGAG
CAGCGTAGACCTGAGGTCCCTCTGCATCAGTCCTCGAGAGCACTGCTGGGTTCTATATGTGGATGTGCTG
CTGCTGGAATGTGGTGGGAATTTGTTTGATGCTATTTCCATTGCTGTAAAAGCTGCTCTCTTCAACACAA
GGATACCAAGGGTTCGTGTTCTGGAGGATGAAGAGGGGGCAAAGGACATTGAGCTGTCTGACGATCCTTA
TGACTGCATCCGACTGAGTGTAGAGAATGTCCCCTGCATTGTCACCCTGTGCAAGATTGGCTGCCGGCAT
GTGGTAGATGCCACACTTCAAGAGGAGGCCTGTTCCCTGGCCAGCTTGCTGGTGTCAGTGACCAGCAAGG
GAGTAGTGACATGCATGAGGAAAGTGGGGAAAGGAAGCCTGGATCCTGAGAGCATCTTCGAGATGATGGA
GAGCAGCAAGCGAGTGGGCAAGGTGCTGCACGTGTCCTTGCAGAGCCTTCTGCACAAGGAAGAAAGCCTG
GGGCCCAAGAGGCCGAGAGTCGGGTTCCTGGGGTGA

Translation (291 aa):
MASVALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK
LEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVL
LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDDPYDCIRLSVENVPCIVTLCKIGCRH
VVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQSLLHKEESL
GPKRPRVGFLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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