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Report for CCDS40983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40983.1 Public Mus musculus X Htatsf1 23 108 98 CCDS HistoryNCBI Gene:72459Re-query CCDS DB by CCDS ID:40983.1Re-query CCDS DB by GeneID:72459See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088652.5 ENSMUSP00000086027.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088652.5Link to Ensembl Protein Viewer:ENSMUSP00000086027.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088652Re-query CCDS DB by Protein ID:ENSMUSP00000086027
Original member Current member NCBI NM_028242.2 NP_082518.1 Accepted alive Link to Nucleotide Sequence:NM_028242.2Link to Protein Sequence:NP_082518.1Re-query CCDS DB by Nucleotide ID:NM_028242Re-query CCDS DB by Protein ID:NP_082518Link to BLAST:NP_082518.1
Original member Current member NCBI NM_029371.1 NP_083647.1 Accepted alive Link to Nucleotide Sequence:NM_029371.1Link to Protein Sequence:NP_083647.1Re-query CCDS DB by Nucleotide ID:NM_029371Re-query CCDS DB by Protein ID:NP_083647Link to BLAST:NP_083647.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082518.1 757 Q8BGC0-1 757 100% 0 0
NP_083647.1 757 Q8BGC0-1 757 100% 0 0

Chromosomal Locations for CCDS 40983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 57054010 57054198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57055498 57055678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57056045 57056092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57056500 57056654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57058886 57059049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57059854 57059953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57064117 57064206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57065006 57065143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57065646 57066854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGAGTGGCAACAACTTGAGCGGGAACGATGAGTTTGATGAGCAATTGCGAATGCAAGAATTGTATGGAG
GAGACCCCAAGGAAGGTGACACCCAGAATGAGCCCTCTGGAGAAGCCCATTCTTTGGGACAACCACCAGA
TGACACTCCTTACGAGTGGGACCTTGATAAGAAGGCTTGGTTCCCTAAGATCACCGAAGATTTCATTGCT
ACGTATCAGGCTAACTACGGCTTTTCTAGTGATGGTGCATCCAGCTCTACTGCGAACGTCCAGGACGCCA
ACACTAAGGCTGTAGAAGAACCTCCACAAAAAGAAGTCCCGGAGACCCCTGACTCCAAAAGGAAGGGGGA
AAAGAGAAAGGCTGAATCTGGATGGTTCCATGTTGAAGAAGACAGAAATACAAATGTATACGTGTCAGGT
CTCCCTCCAGACATCACAGTGGATGAATTTATTCAGCTCATGTCCAAATTTGGCATTATTATGAGAGATC
CTCAGACTGAAGAGTTTAAAGTTAAACTGTACAAAGATGATCAAGGGAATCTTAAAGGAGATGGGCTTTG
TTGTTATCTGAAGAAAGAATCTGTGGAGCTTGCATTAAAACTTTTGGATGAAGATGAAATTAGAGGCTAC
AAATTGCATGTGGAGGTGGCAAAGTTCCAGCTCAAGGGTGAATACGATGCCTCAAAGAAGAAGAAGAAGT
GCAAAGATTATAAGAAGAAGCTGTCTCTACAACAGAAGCAGTTGGATTGGAGACCTGAGAGACGAGCTGG
ACCAAACCGGCTGCGCCATGAGCGAGTTGTCATTCTCAAAAATATGTTTCACCCCATGGACTTTGAGGAT
GACCCATTGGTACTGAATGAGATCAGAGAAGATCTGCGAGTAGAATGTTCCAAGTTTGGGCAGATTCGGA
AGCTCCTTCTGTTTGATAGACACCCAGATGGTGTGGCCTCTGTGTCCTTCAGAGAGCCAGAGGAGGCTGA
CCATTGTATTCAGACTCTGGATGGAAGGTGGTTTGGTGGCCGACAGATCACTGCTCAAGCCTGGGATGGG
ACTACAGATTATCAGGTAGAGGAGACCTCAAGAGAAAGAGAGGAGCGGCTGAGAGGCTGGGAGGCATTCC
TCAATGCTCCTGAGGCCAGCAGAGGCCTCCGGCGGATGGATTCCATCGCTGGTTCAGAAAGGCCAGGGCC
TTCCAGAATGAGGCATTTTTCAGAGCACCCAAGTATGTCTAATATGAAGGCTCAGGAAGCTACAACTGGA
ATGGCATTTGAAGAAACTATCGATGAAAATAAGTTTGAAAAGGCAGAAGAAGGGGGAGAATCCGAAGGAG
ATGCTTCTGAAAAAGATGCCAAAGAAGGTGGGTCTGATGGGGACCACCCTGAGAGAGAGGGTGGAGAAGG
CTGCTCCAAGAAAGAGAATGAAGAGGGCTGCCCTGAGAGGGCGCTTGAGCCTGAGGAGGGTAATCCTCAA
ACCGAGGCTCAAGAGAATGGCCCTGAAAGGGAAGCTAGGAAGAAAAGCAAAATGGATTATGAGAAGAATG
GCTTTTCAAAAGAGTCTGAAGACAATGACCTTGGCAAGGAGTCTGAAGGGGAAGACAGCCTCAAGAAAGA
GTCGGAAGATGATGATTCAGAGGAGGAATCTGAGGAAGACAGCTCAGAAAAGCAATCTCAAGATGGCTCT
GACAAAGAAATAGAAGAAAATGGTGTTAAAAAAGATGTTGACCAGGATGTCTCTGACAAGGAGTTCCCAG
AAGATGTTGAGAAAGAGTCAGAAGAAAATGAGACTGACAAATCAGAATTTGATGAAGGTTCTGAAAGAGT
GTTAGATGAGGAAGGCTCGGAGAGAGAATTTGAGGAAGACTCAGATGAAAAGGAGGAAGAAGGTGATGAT
GATGAAGAAGAGGTCGTATATGAAAGGGTTTTTGATGATGATTCTGATGACATTGAGGAGGAAGAAGAAG
CAGATGAAAAGGAGTGTGAAGATGCTGATGACAAAGAGGAAGACAATGATATAGATGAAAAGCTCTTTGA
TGACTCCGATGAGAAGGAAGATGAAGAAGACACAGATGGAAAGAAAGATGATGATGCCAGTGACAAGGTA
TTCGAAGACAATTCCAATGAGAAGTTGTTTGATGAGGAAGAAGGTCCCAATGAGAAGTTGTTTGATGATT
CTGATGAGAGAGGGACTGTGGGGAATGTGAAGGAAGATGGGTCTCAGTCCACAGACAGCAGCTTTGCCCT
CAGTAGTAGTGATGATGATGATGATGAAGTGTAA

Translation (757 aa):
MSGNNLSGNDEFDEQLRMQELYGGDPKEGDTQNEPSGEAHSLGQPPDDTPYEWDLDKKAWFPKITEDFIA
TYQANYGFSSDGASSSTANVQDANTKAVEEPPQKEVPETPDSKRKGEKRKAESGWFHVEEDRNTNVYVSG
LPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDGLCCYLKKESVELALKLLDEDEIRGY
KLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQLDWRPERRAGPNRLRHERVVILKNMFHPMDFED
DPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQAWDG
TTDYQVEETSREREERLRGWEAFLNAPEASRGLRRMDSIAGSERPGPSRMRHFSEHPSMSNMKAQEATTG
MAFEETIDENKFEKAEEGGESEGDASEKDAKEGGSDGDHPEREGGEGCSKKENEEGCPERALEPEEGNPQ
TEAQENGPEREARKKSKMDYEKNGFSKESEDNDLGKESEGEDSLKKESEDDDSEEESEEDSSEKQSQDGS
DKEIEENGVKKDVDQDVSDKEFPEDVEKESEENETDKSEFDEGSERVLDEEGSEREFEEDSDEKEEEGDD
DEEEVVYERVFDDDSDDIEEEEEADEKECEDADDKEEDNDIDEKLFDDSDEKEDEEDTDGKKDDDASDKV
FEDNSNEKLFDEEEGPNEKLFDDSDERGTVGNVKEDGSQSTDSSFALSSSDDDDDEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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