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Report for CCDS41065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41065.1 Public Mus musculus X Zxdb 23 108 98 CCDS HistoryNCBI Gene:668166Re-query CCDS DB by CCDS ID:41065.1Re-query CCDS DB by GeneID:668166See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101388.3 ENSMUSP00000100524.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101388.3Link to Ensembl Protein Viewer:ENSMUSP00000100524.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101388Re-query CCDS DB by Protein ID:ENSMUSP00000100524
Original member NCBI NM_001081473.1 NP_001074942.1 Updated not alive Link to Nucleotide Sequence:NM_001081473.1Link to Protein Sequence:NP_001074942.1Re-query CCDS DB by Nucleotide ID:NM_001081473Re-query CCDS DB by Protein ID:NP_001074942
Current member NCBI NM_001081473.2 NP_001074942.1 Accepted alive Link to Nucleotide Sequence:NM_001081473.2Link to Protein Sequence:NP_001074942.1Re-query CCDS DB by Nucleotide ID:NM_001081473Re-query CCDS DB by Protein ID:NP_001074942Link to BLAST:NP_001074942.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074942.1 873 A2CE44 873 100% 0 0

Chromosomal Locations for CCDS 41065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 94724675 94727296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2622 nt):
ATGGAAATCCCGAGGCTGCTCCCGGCTCGCGGGACACCGCAGGGCGCCGGTGGCGGCGGCTGCCCGGCGG
GTGGCGGCGGGGTGCACCGAGCCCCGGCCTCTCTGGCTTGTCAGGCCCCCACGCGCCGCCTCCTACTGCT
CCGGGGGGCCCAAGATGGCGGGCCGGGGCCGCGGAGCGCAGAGGCCCAGAGGGCCTCCCGGGGCCTGGGC
CCGAGCCTGAACCGGTTGGCGCCGAGGCCCGATCACCGGAGCAGCGGCGGCGGCAGAGGCGGCGGCGCTG
GCGGAGGAGGAGGAGGCAGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCAGCAGAGGCGGCAGCGACGACTTCTTCCTGTTGCTGCTTGACCCGGTGGGTGGCGATGTAGAAACC
GTGGGCACGGAGCAGGCCGGAGCGCCCGTGCGGAGGGAGGAGGCCGGGGCAGGCCCGAGGCCCGAGCGGC
GCCAGAGCGCCGGGCCCCCAGCGGGCCGTCCCGAGCCGGGTCCCCGCTGTCTGTCTGCGGTCCCGGCCGC
GTCCCCGCTTCCCGCGGCCGGCCCGGGCCCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTTCGCG
GGCACCATCACCATCCACAACCAGGACTTGCTGCTGCGCTTCGAGAACGGCGTCCTCACCCTGACCACGC
CCCCGCTGCCCGCCTGGGAGCCGGGGGTCGCGCCGTTCCCGCAGCCTCAGCCGCCGCCGCAGCCGGGGGC
GCTGATCGCCCCGCAGGCCGCCGCCGCCGGGTTTCCGCCCGCCGCTGCCGCCGCCGCCGCCGCCGCCGCC
GCCGGGGCGCAGCTGGGCGACTGCCCCGAGCTGCCGCCGGACCTCCTGCTGGCGGAGCCGGCGGAACCCG
CGGCCTGCCCGGCGCCCCCGGAGGAGGAGGCCGAGGCCCCGGCCGCCGCCGCCGCGCAGAGCCCCCGCGG
GCCCGCGGGCCCGGGCCCGGGCCCGGGCGTGGTGCTGTACCTGTGCCCGGAGGCGCAGTGCGGCCAGACC
TTCGCCAAGAAGCACCAGCTGAAGGTGCACCTGCTGACGCACAGCAGCAGCCAGGGCCAGCGGCCCTTCA
AGTGCCCGCTCAGCGGCTGCGGCTGGACCTTCACCACCTCCTACAAGCTCAAGCGGCACCTGCAGTCGCA
CGACAAGCTGCGGCCATTCGGCTGCCCGGTGCAGGGCTGCGGCAAGAGCTTCACCACCGTCTACAACCTC
AAGGCGCACATGAAGGGGCACGAGCAGGAGAACTCCTTCAAATGCGAGGTGTGCGAGGAGAGCTTCCCCA
CGCAGGCCAAGCTCAGCACCCACCAGCGCAGCCACTTCGAGCCCGAGAGGCCCTACCAGTGCGCGTTTTC
GGGCTGCAAGAAGACCTTCATCACGGTGAGCGCCCTGTTCTCGCACAACCGCGCCCATTTCAGGGAACAG
GAACTCTTCGCCTGCTCCTTCCCTGGCTGCAGCAAGCAGTACGACAAGGCCTGCAGGCTCAAGATCCACC
TGCGCAGCCACACCGGGGAGAGACCCTTCCTGTGTGACTTCGACGGCTGCGGCTGGAACTTCACCAGCAT
GTCCAAGCTCTTAAGGCACAAGCGGAAGCACGAGGACGACCGCAGGTTCACCTGTCCCGTCGAGGGCTGC
GGCAAGTCCTTCACCAGGGCCGAGCACCTGAAAGGCCACAGCATAACCCACCTGGGCACCAAGCCCTTCG
TGTGCCCCGTGGAGGGCTGCTGTGCCCGCTTCTCGGCTCGCAGCAGCCTCTACATCCACTCCAAGAAGCA
CTTGCAGGACGTGGGTGCGTGGAAGAGCCGCTGCCCGGTCCCCACCTGTAACAAGCTCTTCACGTCCAAG
CACAGCATGAAGACCCACATGACCAAAAGGCACAACCTCAGCCAGGACCTCCTGGCCCAGCTAGAAGCTG
CCAACTCTCTCACGCCCAGCAGTGAGCTCACCAGCCCGGGGCAGAGCGATCTCAGTGGGGCCGAGCTCGT
GTCTCTGTTCTCGGATGTGCCTGGCCACGGTTCCGCCGCGGTGCTGGACACGGCCTTGGTCAACTCTGGC
ATCTTGACTATTGATGTGGCCTCTGTGAACTCGAGCCTCGCGGGAAGTCTCCCTGCGGATAATAACAGCA
ACAACCATTCCTTGGGGCAAGCGGCCGAGCCTCGGGCCTTGAGGGGGGCCCCCAGTGACCTCCCCCAGAG
TCTGGATACCTCTCTCTTCTTCGGAACCTCGGTGGCTGGCTACCAGCACAGCCCCTTGGACATGGACGAT
GTCTCCGCCGGGAACGTGGGGCTCTTTGGCTCCTTGGCCCTGAAAAACTCAAGCCTGGAGCCGCAGGCTT
TGACACCCAGCAATAAGTTGACTGTGGACACGGAAGCTCTGACCCCCTCCAGCACCCTCTGTGAAAACAG
TGTCTCCGAGCTACTGACCCCAGCCAAAGCCGAGTGGAACGTGCACCCCGAATCTGACTTCTTTGGACAC
GAGGAAGAAACCCAGTTCGGATTCTCCCACCCAACAGGAAGCCATGGGTCTCAGAAAGACACAGATCTTA
TCACGGTGACTGGCACCCCGTTTTTGGTATGA

Translation (873 aa):
MEIPRLLPARGTPQGAGGGGCPAGGGGVHRAPASLACQAPTRRLLLLRGAQDGGPGPRSAEAQRASRGLG
PSLNRLAPRPDHRSSGGGRGGGAGGGGGGSGGGGGGGGGGGGGGGGGGSRGGSDDFFLLLLDPVGGDVET
VGTEQAGAPVRREEAGAGPRPERRQSAGPPAGRPEPGPRCLSAVPAASPLPAAGPGPAAAAAAAAAAAFA
GTITIHNQDLLLRFENGVLTLTTPPLPAWEPGVAPFPQPQPPPQPGALIAPQAAAAGFPPAAAAAAAAAA
AGAQLGDCPELPPDLLLAEPAEPAACPAPPEEEAEAPAAAAAQSPRGPAGPGPGPGVVLYLCPEAQCGQT
FAKKHQLKVHLLTHSSSQGQRPFKCPLSGCGWTFTTSYKLKRHLQSHDKLRPFGCPVQGCGKSFTTVYNL
KAHMKGHEQENSFKCEVCEESFPTQAKLSTHQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQ
ELFACSFPGCSKQYDKACRLKIHLRSHTGERPFLCDFDGCGWNFTSMSKLLRHKRKHEDDRRFTCPVEGC
GKSFTRAEHLKGHSITHLGTKPFVCPVEGCCARFSARSSLYIHSKKHLQDVGAWKSRCPVPTCNKLFTSK
HSMKTHMTKRHNLSQDLLAQLEAANSLTPSSELTSPGQSDLSGAELVSLFSDVPGHGSAAVLDTALVNSG
ILTIDVASVNSSLAGSLPADNNSNNHSLGQAAEPRALRGAPSDLPQSLDTSLFFGTSVAGYQHSPLDMDD
VSAGNVGLFGSLALKNSSLEPQALTPSNKLTVDTEALTPSSTLCENSVSELLTPAKAEWNVHPESDFFGH
EEETQFGFSHPTGSHGSQKDTDLITVTGTPFLV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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