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Report for CCDS41343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41343.1 Public Homo sapiens 1 MYSM1 24 110 108 CCDS HistoryNCBI Gene:114803Re-query CCDS DB by CCDS ID:41343.1Re-query CCDS DB by GeneID:114803See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41343.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000472487.6 ENSP00000418734.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000472487.6Link to Ensembl Protein Viewer:ENSP00000418734.1Re-query CCDS DB by Nucleotide ID:ENST00000472487Re-query CCDS DB by Protein ID:ENSP00000418734
Original member Current member NCBI NM_001085487.3 NP_001078956.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085487.3Link to Protein Sequence:NP_001078956.1Re-query CCDS DB by Nucleotide ID:NM_001085487Re-query CCDS DB by Protein ID:NP_001078956Link to BLAST:NP_001078956.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078956.1 828 Q5VVJ2-1 828 100% 0 0

Chromosomal Locations for CCDS 41343.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 58659997 58660155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58661170 58661227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58661406 58661511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58665499 58665631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58667038 58667226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58667847 58667921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58668632 58668682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58668984 58669038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58671870 58671958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58673573 58673650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58675477 58675580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58676926 58677056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58681785 58682545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58685153 58685251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58689038 58689116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58690226 58690249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58690340 58690417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58692861 58692931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58695129 58695207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58699985 58700052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2487 nt):
ATGGCGGCTGAAGAGGCGGATGTGGATATCGAAGGGGACGTGGTAGCGGCGGCGGGGGCACAGCCAGGAA
GTGGTGAAAATACAGCATCAGTTTTACAAAAAGATCACTATCTTGATTCATCTTGGAGAACAGAGAATGG
CCTTATTCCTTGGACCTTGGATAACACCATCAGTGAAGAGAACAGAGCTGTTATTGAGAAAATGTTGTTG
GAAGAAGAATATTATTTATCTAAAAAATCACAACCGGAAAAAGTCTGGCTTGATCAAAAGGAAGATGATA
AAAAATACATGAAGAGTCTGCAGAAAACAGCAAAAATCATGGTACACTCTCCTACAAAACCAGCCAGTTA
CTCAGTAAAGTGGACGATAGAAGAAAAAGAGCTGTTTGAACAAGGGCTGGCTAAATTTGGCCGAAGATGG
ACCAAAATTTCAAAGCTAATTGGAAGCCGCACTGTTTTACAAGTGAAGAGTTATGCAAGACAGTATTTTA
AAAATAAGGTCAAATGCGGTCTGGATAAAGAAACACCAAATCAGAAGACCGGCCATAATCTTCAAGTTAA
AAATGAAGATAAAGGGACAAAGGCATGGACACCATCATGTTTAAGGGGACGTGCTGATCCCAACTTGAAT
GCTGTAAAAATTGAAAAGTTATCTGATGATGAAGAAGTAGACATCACAGATGAGGTGGACGAGTTGTCTT
CTCAAACACCCCAGAAGAATTCTAGCAGTGATCTCTTGTTAGACTTTCCTAATAGTAAAATGCATGAAAC
CAATCAAGGAGAATTCATTACTTCTGACAGCCAGGAAGCTCTCTTTTCTAAGTCTTCCAGGGGCTGTCTT
CAAAATGAAAAGCAAGATGAAACACTTTCAAGCTCAGAAATTACACTGTGGACTGAGAAACAGAGCAATG
GTGACAAAAAATCAATTGAATTAAATGACCAGAAATTTAATGAATTGATTAAAAACTGCAACAAGCATGA
TGGAAGGGGAATAATAGTTGATGCCAGGCAGTTGCCTTCTCCAGAGCCTTGTGAAATTCAGAAAAATTTG
AATGATAATGAAATGCTTTTTCATTCTTGCCAAATGGTAGAGGAAAGCCATGAGGAAGAAGAGCTTAAGC
CACCAGAACAGGAAATAGAAATAGATAGAAATATCATTCAAGAAGAAGAAAAACAAGCAATTCCTGAGTT
TTTTGAGGGGCGCCAAGCTAAAACACCAGAACGCTATTTGAAAATTAGAAATTATATTTTGGATCAATGG
GAGATATGCAAACCAAAATACTTAAATAAGACCTCAGTACGTCCTGGCCTGAAGAACTGTGGAGATGTTA
ATTGTATTGGACGGATTCATACATACCTCGAATTGATAGGAGCAATCAATTTTGGATGTGAACAGGCTGT
GTATAATAGGCCACAAACAGTTGACAAAGTACGAATCAGAGACAGAAAAGATGCAGTAGAAGCATACCAA
CTTGCCCAGCGTCTGCAGTCTATGCGTACAAGGAGACGTAGGGTCCGAGACCCATGGGGAAACTGGTGTG
ATGCAAAGGACTTAGAAGGACAAACGTTTGAGCATCTCTCTGCTGAGGAGTTGGCAAAAAGAAGAGAAGA
GGAAAAAGGCAGACCTGTTAAATCTTTAAAAGTGCCAAGACCAACAAAAAGCTCGTTTGATCCCTTCCAA
CTGATACCTTGTAATTTTTTTAGTGAAGAAAAGCAGGAGCCATTTCAGGTGAAAGTGGCTTCAGAAGCAC
TTTTAATAATGGATTTGCATGCTCATGTTTCTATGGCAGAAGTGATTGGTCTGTTAGGAGGAAGATACTC
AGAAGTTGATAAAGTAGTTGAAGTCTGTGCAGCAGAACCATGTAACAGTCTGAGTACAGGACTACAGTGT
GAGATGGATCCTGTATCACAAACACAGGCCTCAGAAACCTTGGCTGTTAGAGGCTTCAGTGTTATTGGAT
GGTATCATTCTCATCCTGCTTTTGATCCTAATCCTTCCTTACGAGATATTGACACACAAGCTAAATACCA
GAGTTACTTCTCCAGAGGAGGTGCAAAGTTCATTGGGATGATTGTTAGTCCCTATAATCGAAATAATCCC
TTACCATATTCTCAGATTACCTGCCTGGTTATAAGTGAGGAAATTAGCCCAGATGGCTCTTATCGCTTAC
CTTACAAATTTGAAGTACAGCAGATGTTAGAAGAACCTCAGTGGGGATTAGTATTTGAAAAGACAAGATG
GATAATAGAAAAATACAGGCTCTCCCATAGCAGCGTCCCCATGGATAAAATCTTTCGCCGGGATTCTGAC
CTGACTTGTTTGCAGAAACTTTTGGAGTGTATGAGGAAGACTCTGAGCAAAGTGACCAATTGCTTTATGG
CTGAAGAATTCTTGACTGAAATAGAAAATTTGTTCCTTTCCAATTATAAAAGCAACCAAGAGAATGGAGT
AACCGAAGAGAACTGTACAAAGGAATTGTTAATGTGA

Translation (828 aa):
MAAEEADVDIEGDVVAAAGAQPGSGENTASVLQKDHYLDSSWRTENGLIPWTLDNTISEENRAVIEKMLL
EEEYYLSKKSQPEKVWLDQKEDDKKYMKSLQKTAKIMVHSPTKPASYSVKWTIEEKELFEQGLAKFGRRW
TKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKTGHNLQVKNEDKGTKAWTPSCLRGRADPNLN
AVKIEKLSDDEEVDITDEVDELSSQTPQKNSSSDLLLDFPNSKMHETNQGEFITSDSQEALFSKSSRGCL
QNEKQDETLSSSEITLWTEKQSNGDKKSIELNDQKFNELIKNCNKHDGRGIIVDARQLPSPEPCEIQKNL
NDNEMLFHSCQMVEESHEEEELKPPEQEIEIDRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQW
EICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAINFGCEQAVYNRPQTVDKVRIRDRKDAVEAYQ
LAQRLQSMRTRRRRVRDPWGNWCDAKDLEGQTFEHLSAEELAKRREEEKGRPVKSLKVPRPTKSSFDPFQ
LIPCNFFSEEKQEPFQVKVASEALLIMDLHAHVSMAEVIGLLGGRYSEVDKVVEVCAAEPCNSLSTGLQC
EMDPVSQTQASETLAVRGFSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPYNRNNP
LPYSQITCLVISEEISPDGSYRLPYKFEVQQMLEEPQWGLVFEKTRWIIEKYRLSHSSVPMDKIFRRDSD
LTCLQKLLECMRKTLSKVTNCFMAEEFLTEIENLFLSNYKSNQENGVTEENCTKELLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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