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Report for CCDS41354.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41354.2 Public Homo sapiens 1 ODF2L 24 110 108 CCDS HistoryNCBI Gene:57489Re-query CCDS DB by CCDS ID:41354.2Re-query CCDS DB by GeneID:57489See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 41354.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41354.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317336.11 ENSP00000320165.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317336.11Link to Ensembl Protein Viewer:ENSP00000320165.8Re-query CCDS DB by Nucleotide ID:ENST00000317336Re-query CCDS DB by Protein ID:ENSP00000320165
Original member Current member EBI ENST00000359242.7 ENSP00000359600.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359242.7Link to Ensembl Protein Viewer:ENSP00000359600.2Re-query CCDS DB by Nucleotide ID:ENST00000359242Re-query CCDS DB by Protein ID:ENSP00000359600
Original member Current member NCBI NM_001007022.4 NP_001007023.2 Accepted alive Link to Nucleotide Sequence:NM_001007022.4Link to Protein Sequence:NP_001007023.2Re-query CCDS DB by Nucleotide ID:NM_001007022Re-query CCDS DB by Protein ID:NP_001007023Link to BLAST:NP_001007023.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007023.2 636 Q9ULJ1-1 636 100% 0 0

Chromosomal Locations for CCDS 41354.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 86352191 86352208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86352859 86352984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86354530 86354692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86354774 86354859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86356444 86356602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86358787 86358891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86360426 86360536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86368636 86368722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86371018 86371153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86372431 86372540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86376233 86376418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86382242 86382358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86382931 86383002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86383134 86383196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86384676 86384801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86385458 86385590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86386915 86387027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGGAGAAGGCTGTAAATGATGGAAGTCATTCAGAAGAACTCTTTTGCCATCTTAAAACTATATCAGAGA
AAGAAGATTTACCACGGTGTACCAGTGAAAGTCATCTCAGCTGCCTGAAGCAGGACATTCTAAATGAAAA
GACTGAATTGGAAGCAACACTTAAGGAAGCGGAGTTGGTAACTCATTCTGTAGAATTGCTTTTGCCACTA
TTTAAGGACACCATTGAAAAGATTAATTTTGAAAATGCGAATCTTTCTGCATTGAATTTGAAGATTTCTG
AACAGAAGGAAATATTAATAAAAGAATTAGACACCTTCAAAAGTGTAAAACTAGCTTTAGAACATCTTCT
TAGAAAGAGAGACTACAAACAAACAGGAGACAATTTATCCAGCATGTTGCTAGAAAATCTAACTGATAAT
GAAAGTGAAAATACTAATCTTAAGAAGAAGGTATTTGAAAAGGAGGCCCATATCCAAGAACTTTCTTGTT
TGTTTCAGAGTGAAAAGGCAAATACTTTGAAAGCAAACCGTTTTTCCCAATCAGTAAAAGTAGTACATGA
ACGACTACAGATCCAAATTCATAAAAGGGAAGCCGAGAACGATAAGTTGAAAGAATATGTAAAGAGCTTA
GAAACCAAGATAGCCAAGTGGAACCTGCAATCAAGAATGAATAAGAATGAGGCTATAGTGATGAAAGAAG
CAAGTAGGCAAAAAACTGTAGCTTTAAAAAAGGCATCTAAAGTTTACAAACAAAGGCTTGACCATTTTAC
AGGAGCTATTGAAAAGCTTACTTCCCAAATTAGAGATCAGGAAGCCAAGTTGTCTGAAACAATTTCAGCT
TCCAATGCCTGGAAAAGTCATTATGAGAAAATTGTGATAGAAAAAACCGAATTGGAAGTACAGATTGAAA
CAATGAAAAAGCAAATCATTAATCTTTTGGAAGATCTGAAGAAAATGGAAGACCATGGAAAAAATTCATG
TGAAGAAATTCTTAGAAAAGTTCACTCAATTGAATATGAAAATGAAACTCTGAATCTTGAGAATACAAAA
TTAAAGCTTAGATTCCCATGTAGAATTACTGAGTCAAAGAATATGAACATTTTGATTGTTCTTGATATGC
TTTGCTACATTTCTTCTGAAAAGACTACACTTGCTGCTTTGAAGGATGAAGTTGTATCTGTTGAAAATGA
ACTCTCAGAATTGCAAGAAGTAGAAAAAAAACAGAAAACCCTTATTGAAATGTATAAAACTCAGGTACAA
AAGTTGCAAGAAGCAGCTGAAATAGTAAAAAGCAGATGTGAAAATTTGCTACATAAAAATAACCAAATAA
CAAAAACCAAAAATAAAAATGTAGAGAAGATGAGAGGCCAGATGGAGTCTCATCTGAAGGAGTTAGAGCG
TGTCTGCGATTCCTTGACGGCGGCGGAACGGAGGCTTCACGAGTGTCAGGAGAGTCTGCAGTGCTGCAAG
GGGAAGTGTGCAGACCAGGAACACACCATTAGGGAGCTTCAGGGCCAGGTTGATGGAAATCACAATCTTC
TGACAAAGCTTTCTCTGGAAGAGGAAAACTGTCTTATTCAGCTGAAGTGTGAAAACCTTCAACAAAAATT
AGAACAGATGGACGCAGAAAATAAAGAGCTTGAGAAGAAGCTGGCAAACCAAGAAGAATGTCTTAAGCAC
AGCAATCTTAAGTTTAAAGAGAAATCTGCAGAGTATACAGCATTGGCCAGACAACTGGAAGCTGCTTTAG
AAGAAGGAAGACAAAAGGTTGCTGAAGAAATAGAGAAAATGTCATCTAGAGAGAGTGCTTTACAAATTAA
AATATTAGATCTGGAAACTGAGCTTAGAAAGAAAAATGAAGAACAAAATCAACTTGTTTGCAAAATGAAC
AGTGATCCAGAGACTCCATGA

Translation (636 aa):
MEKAVNDGSHSEELFCHLKTISEKEDLPRCTSESHLSCLKQDILNEKTELEATLKEAELVTHSVELLLPL
FKDTIEKINFENANLSALNLKISEQKEILIKELDTFKSVKLALEHLLRKRDYKQTGDNLSSMLLENLTDN
ESENTNLKKKVFEKEAHIQELSCLFQSEKANTLKANRFSQSVKVVHERLQIQIHKREAENDKLKEYVKSL
ETKIAKWNLQSRMNKNEAIVMKEASRQKTVALKKASKVYKQRLDHFTGAIEKLTSQIRDQEAKLSETISA
SNAWKSHYEKIVIEKTELEVQIETMKKQIINLLEDLKKMEDHGKNSCEEILRKVHSIEYENETLNLENTK
LKLRFPCRITESKNMNILIVLDMLCYISSEKTTLAALKDEVVSVENELSELQEVEKKQKTLIEMYKTQVQ
KLQEAAEIVKSRCENLLHKNNQITKTKNKNVEKMRGQMESHLKELERVCDSLTAAERRLHECQESLQCCK
GKCADQEHTIRELQGQVDGNHNLLTKLSLEEENCLIQLKCENLQQKLEQMDAENKELEKKLANQEECLKH
SNLKFKEKSAEYTALARQLEAALEEGRQKVAEEIEKMSSRESALQIKILDLETELRKKNEEQNQLVCKMN
SDPETP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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