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Report for CCDS41356.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41356.2 Public Homo sapiens 1 CCDC18 24 110 108 CCDS HistoryNCBI Gene:343099Re-query CCDS DB by CCDS ID:41356.2Re-query CCDS DB by GeneID:343099See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 41356.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401026.7 ENSP00000383808.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401026.7Link to Ensembl Protein Viewer:ENSP00000383808.3Re-query CCDS DB by Nucleotide ID:ENST00000401026Re-query CCDS DB by Protein ID:ENSP00000383808
Original member Current member NCBI NM_206886.4 NP_996769.3 Accepted alive Link to Nucleotide Sequence:NM_206886.4Link to Protein Sequence:NP_996769.3Re-query CCDS DB by Nucleotide ID:NM_206886Re-query CCDS DB by Protein ID:NP_996769Link to BLAST:NP_996769.3

Chromosomal Locations for CCDS 41356.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93183362 93183495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93183978 93184146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93186345 93186503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93192000 93192106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93193616 93193744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93201892 93201988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93205510 93205631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93207107 93207398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93210802 93210926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93212101 93212261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93214743 93214966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93216636 93216746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93217738 93217869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93221609 93221743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93221859 93221936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93226333 93226449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93232426 93232593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93236248 93236390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93239310 93239473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93239683 93239896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93246105 93246204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93246838 93246954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93254471 93254614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93256335 93256538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93258748 93258885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93264701 93264901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93278463 93278477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3900 nt):
ATGGAATCTAGTTCATCAGACTACTATAATAAAGACAATGAAGAGGAAAGTTTGCTTGCAAATGTTGCTT
CCTTAAGACATGAACTGAAGATAACAGAATGGAGTTTGCAGAGTTTAGGGGAAGAGTTATCCAGTGTTAG
TCCAAGTGAAAATTCTGATTATGCCCCTAATCCTTCAAGGTCTGAAAAGCTAATTTTGGATGTTCAGCCT
AGCCACCCTGGACTTTTGAATTATTCACCTTATGAAAACGTCTGTAAAATATCTGGTAGCAGCACTGATT
TTCAAAAAAAGCCAAGAGATAAGATGTTTTCATCTTCTGCCCCTGTGGATCAGGAGATTAAAAGCCTTCG
AGAGAAACTAAATAAACTTAGGCAACAGAATGCTTGTTTGGTCACACAGAATCATTCCTTAATGACTAAA
TTTGAATCTATTCACTTTGAATTAACACAGTCAAGAGCAAAAGTTTCTATGCTTGAGTCTGCTCAACAGC
AGGCAGCCAGTGTCCCAATCTTAGAAGAACAGATTATAAATTTGGAAGCAGAGGTTTCAGCTCAAGATAA
AGTTTTGAGAGAGGCAGAAAATAAGCTGGAACAGAGCCAGAAAATGGTAATTGAAAAGGAACAGAGTTTG
CAGGAGTCCAAAGAGGAATGTATAAAATTAAAGGTGGACTTACTTGAACAAACCAAACAAGGAAAAAGAG
CTGAACGACAAAGGAATGAAGCACTATATAATGCCGAAGAGCTGAGTAAAGCTTTCCAACAATATAAAAA
AAAAGTGGCTGAAAAACTGGAAAAGGTTCAAGCTGAAGAAGAAATATTAGAGAGAAATCTAACTAACTGT
GAAAAAGAAAATAAAAGGCTACAAGAAAGGTGTGGTCTATATAAAAGTGAACTTGAAATTCTGAAAGAGA
AATTAAGGCAGTTAAAAGAAGAAAATAACAACGGAAAAGAAAAATTAAGGATCATGGCAGTGAAAAATTC
AGAAGTCATGGCACAACTAACTGAATCTAGACAAAGTATTTTGAAGCTAGAGAGTGAGTTAGAGAACAAA
GACGAAATACTTAGAGACAAATTTTCTTTAATGAATGAAAACCGAGAATTAAAGGTCCGTGTTGCAGCAC
AGAATGAGCGACTAGATTTATGTCAACAAGAAATTGAAAGTTCAAGGGTAGAACTAAGAAGTTTGGAAAA
GATTATATCCCAGTTGCCATTAAAAAGAGAATTATTTGGCTTTAAATCATATCTTTCTAAATACCAGATG
AGTAGCTTCTCAAACAAGGAAGACCGTTGCATTGGCTGCTGTGAGGCAAATAAATTGGTGATTTCGGAAT
TGAGAATTAAGCTTGCAATAAAAGAGGCAGAAATTCAAAAGCTTCATGCAAACCTGACTGCAAATCAGTT
ATCTCAGAGTCTTATTACTTGTAATGACAGCCAAGAAAGTAGCAAATTAAGTAGTTTAGAAACAGAACCT
GTAAAGCTAGGTGGTCATCAAGTAGCAGAAAGCGTAAAAGATCAAAATCAACATACTATGAACAAGCAAT
ATGAAAAAGAGAGGCAAAGACTTGTTACTGGAATAGAAGAACTACGTACTAAGCTGATACAAATAGAAGC
TGAAAATTCTGATTTGAAGGTTAACATGGCTCACAGAACTAGTCAGTTTCAGCTGATTCAAGAGGAGCTG
CTAGAGAAAGCTTCAAACTCCAGCAAACTGGAAAGTGAAATGACAAAGAAATGTTCTCAACTTTTAACTC
TTGAGAAACAGCTGGAAGAAAAGATAGTTGCTTATTCCTCTATTGCTGCAAAAAATGCAGAACTAGAACA
GGAGCTTATGGAAAAGAATGAAAAGATAAGGAGTCTAGAAACCAATATTAATACAGAGCATGAGAAAATT
TGTTTAGCCTTTGAAAAAGCAAAGAAAATTCACTTGGAACAGCATAAAGAAATGGAAAAGCAGATTGAAA
GACTTGAAGCTCAACTAGAGAAAAAGGACCAACAATTTAAAGAACAAGAAAAGACTATGTCCATGTTGCA
ACAAGATATAATATGCAAACAACATCATCTTGAATCACTAGATAGACTCTTGACGGAAAGCAAAGGGGAA
ATGAAAAAGGAAAATATGAAGAAAGATGAAGCTTTAAAAGCATTACAGAACCAAGTATCTGAAGAAACAA
TCAAGGTTAGGCAACTAGATTCAGCATTGGAAATTTGTAAGGAAGAACTTGTCTTGCATTTGAATCAATT
GGAAGGAAATAAGGAAAAGTTTGAAAAACAGTTAAAGAAGAAATCTGAAGAGGTATATTGTTTACAGAAA
GAGCTAAAGATAAAAAATCACAGTCTTCAAGAGACTTCTGAGCAAAACGTTATTCTACAGCATACTCTTC
AGCAACAGCAGCAAATGTTACAACAAGAGACAATTAGAAATGGAGAGCTAGAAGATACTCAAACTAAACT
TGAAAAACAGGTGTCAAAACTGGAACAAGAACTTCAAAAACAAAGGGAAAGTTCAGCTGAAAAGTTGAGA
AAAATGGAGGAGAAATGTGAATCAGCTGCACATGAAGCAGATTTGAAAAGGCAAAAAGTGATTGAGCTTA
CTGGCACTGCCAGGCAAGTAAAGATTGAGATGGATCAGTACAAAGAAGAGCTGTCTAAAATGGAAAAGGA
AATAATGCACCTAAAACGAGATGGAGAAAATAAAGCAATGCACCTCTCTCAATTAGATATGATCTTAGAT
CAGACAAAGACAGAGCTAGAAAAGAAAACAAATGCTGTAAAGGAGTTAGAAAAGTTACAGCACAGTACTG
AAACTGAACTAACAGAAGCCTTGCAAAAACGGGAAGTACTTGAGACTGAACTACAAAATGCTCATGGAGA
ATTAAAAAGTACTTTAAGACAACTCCAGGAATTGAGAGATGTACTACAGAAGGCTCAATTATCATTAGAG
GAAAAATACACTACTATAAAGGATCTCACAGCTGAACTTAGAGAATGCAAGATGGAGATTGAAGACAAAA
AGCAGGAGCTCCTTGAAATGGATCAGGCACTTAAAGAGAGAAATTGGGAACTAAAGCAAAGAGCAGCTCA
GGTTACACATTTGGATATGACTATTCGTGAGCACAGAGGAGAAATGGAACAAAAAATAATTAAATTAGAA
GGTACTCTGGAGAAATCAGAATTGGAACTTAAAGAATGTAACAAACAGATAGAAAGTCTGAATGACAAAT
TACAAAATGCTAAAGAACAGCTTCGAGAAAAAGAGTTTATAATGCTACAAAATGAACAGGAGATAAGTCA
ACTGAAAAAAGAAATTGAAAGAACACAACAAAGGATGAAAGAAATGGAGAGTGTTATGAAAGAGCAAGAA
CAGTACATTGCCACTCAGTACAAGGAGGCCATAGATTTGGGGCAAGAATTGAGGCTGACCCGGGAGCAGG
TGCAGAACTCTCATACAGAATTGGCAGAGGCTCGTCATCAGCAAGTCCAAGCACAGAGAGAAATAGAAAG
GCTCTCTAGTGAACTGGAGGATATGAAGCAACTCTCTAAAGAGAAAGATGCTCATGGAAACCATTTAGCT
GAAGAACTGGGGGCTTCTAAAGTACGTGAAGCTCATTTAGAAGCAAGAATGCAAGCAGAAATCAAGAAAT
TGTCAGCAGAAGTAGAATCTCTCAAAGAAGCTTATCATATGGAGATGATTTCACATCAAGAGAACCATGC
AAAGTGGAAGATTTCTGCTGACTCTCAAAAGTCTTCTGTTCAGCAACTAAACGAACAGTTAGAGAAGGCA
AAATTGGAATTAGAAGAAGCTCAGGATACTGTAAGCAATTTGCATCAACAAGTCCAAGATAGGAATGAAG
TAATTGAAGCTGCAAATGAAGCATTACTTACTAAAGGAGAAAATGTGTAA

Translation (1299 aa):
MESSSSDYYNKDNEEESLLANVASLRHELKITEWSLQSLGEELSSVSPSENSDYAPNPSRSEKLILDVQP
SHPGLLNYSPYENVCKISGSSTDFQKKPRDKMFSSSAPVDQEIKSLREKLNKLRQQNACLVTQNHSLMTK
FESIHFELTQSRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSL
QESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNC
EKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENK
DEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFGFKSYLSKYQM
SSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEP
VKLGGHQVAESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEEL
LEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKI
CLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGE
MKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQK
ELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLR
KMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILD
QTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLE
EKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLE
GTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQE
QYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLA
EELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKA
KLELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKGENV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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