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Report for CCDS4161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4161.1 Public Homo sapiens 5 SHROOM1 24 110 108 CCDS HistoryNCBI Gene:134549Re-query CCDS DB by CCDS ID:4161.1Re-query CCDS DB by GeneID:134549See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4161.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319854.7 ENSP00000324245.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000319854.7Link to Ensembl Protein Viewer:ENSP00000324245.3Re-query CCDS DB by Nucleotide ID:ENST00000319854Re-query CCDS DB by Protein ID:ENSP00000324245
Original member Current member NCBI NM_133456.3 NP_597713.2 Accepted alive Link to Nucleotide Sequence:NM_133456.3Link to Protein Sequence:NP_597713.2Re-query CCDS DB by Nucleotide ID:NM_133456Re-query CCDS DB by Protein ID:NP_597713Link to BLAST:NP_597713.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_597713.2 847 Q2M3G4-2 847 100% 0 0

Chromosomal Locations for CCDS 4161.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132822796 132823113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132823250 132823522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132823623 132823764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132823850 132824419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132824615 132824821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132825018 132825073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132825163 132826140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2544 nt):
ATGGAGGCCCTGGGACCTGGGGGCGACCGCGCCTCCCCGGCCTCGTCCACTAGCAGCCTGGACCTGTGGC
ATCTGTCCATGCGCGCGGACTCGGCCTACAGCTCTTTCTCCGCAGCCTCCGGCGGCCCCGAGCCGCGCAC
GCAGTCGCCGGGGACAGACCTCCTTCCTTACCTAGACTGGGACTACGTGCGTGTGGTTTGGGGCGGCCCG
GGCCCCGCCCCGCCCGACGCTGCCCTTTGCACATCCCCGCGGCCCCGGCCCGCGGTTGCAGCCCGCAGTG
GGCCGCAGCCAACAGAGGTCCCGGGGACCCCGGGACCACTGAACAGGCAGGCCACCCCGCTGCTGTACGC
GCTGGCGGCCGAGGCGGAGGCCGCGGCGCAGGCTGCCGAGCCGCCCAGCCCGCCGGCCTCGAGGGCCGCC
TACCGCCAGCGGCTTCAGGGCGCGCAGCGGCGAGTGCTCCGGGAGACGTCGTTCCAGCGCAAGGAGCTCC
GCATGAGCCTGCCCGCCCGTCTGCGGCCCACTGTCCCAGCGCGGCCCCCGGCGACTCACCCGCGCTCCGC
CTCGCTCAGCCACCCGGGCGGGGAGGGGGAGCCGGCGCGCTCCCGGGCTCCCGCGCCAGGAACTGCCGGC
CGGGGTCCCCTCGCCAACCAGCAGCGGAAGTGGTGCTTCTCAGAGCCAGGAAAGCTGGATCGTGTGGGTC
GGGGCGGTGGGCCGGCGCGGGAATGCCTGGGTGAGGCCTGCTCCAGCTCTGGCCTCCCTGGGCCCGAGCC
CTTGGAGTTCCAGCATCCGGCGCTGGCTAAGTTTGAAGATCACGAGGTCGGATGGCTGCCCGAGACGCAA
CCCCAAGGCTCCATGAACCTGGACTCCGGGTCCTTGAAGCTCGGTGATGCCTTCAGGCCCGCCAGTCGGA
GTCGGAGCGCTTCAGGCGAAGTCTTGGGTTCCTGGGGAGGATCAGGAGGGACCATACCCATTGTCCAGGC
TGTTCCCCAAGGAGCAGAAACCCCCAGACCATTGTTTCAGACCAAACTTTCCAGGTTCTTGCCTCAGAAA
GAGGCTGCGGTGATGTATCCTGCAGAGTTACCCCAGAGCAGCCCTGCTGACAGTGAACAGAGGGTCTCAG
AGACCTGCATTGTGCCTGCCTGGCTCCCCTCCCTTCCTGATGAAGTGTTCCTAGAAGAGGCCCCACTGGT
CAGAATGAGATCACCACCAGACCCCCATGCCTCCCAGGGGCCCCCAGCCAGTGTCCATGCCTCTGACCAG
CCGTATGGAACTGGCTTAGGCCAAAGAACTGGCCAGGTTACAGTCCCCACAGAGTACCCGCTCCATGAGT
GTCCAGGAACTGCAGGGGCAGATGACTGCTGGCAGGGGGTGAATGGTTCTGTAGGTATTTCCAGGCCCAC
AAGCCACACCCCCACTGGGACTGCAAATGATAACATCCCAACTATTGACCCCACTGGACTGACCACCAAT
CCCCCCACAGCTGCAGAGAGTGACCTCCTCAAACCTGTCCCAGCTGATGCCTTGGGACTTTCAGGCAATG
ATACTCCAGGTCCCTCTCACAATACTGCCCTAGCCAGGGGCACTGGCCAGCCTGGTTCCAGGCCCACATG
GCCTAGTCAGTGCCTCGAGGAGCTGGTTCAGGAGCTGGCCAGATTAGATCCCTCTCTATGTGACCCTCTT
GCTTCCCAGCCCAGCCCAGAGCCACCCCTGGGCCTGCTGGATGGACTGATTCCTTTAGCAGAGGTCCGGG
CTGCAATGCGGCCTGCCTGTGGGGAGGCTGGAGAGGAGGCTGCCAGTACTTTTGAGCCAGGGTCCTATCA
GTTCAGCTTCACCCAGCTCCTGCCGGCTCCTCGGGAGGAGACAAGGCTTGAAAACCCTGCCACCCACCCT
GTGCTTGACCAGCCATGTGGGCAGGGGCTCCCTGCACCAAACAACAGCATCCAGGGCAAGAAAGTGGAGC
TGGCCGCCCGCCTCCAAAAGATGCTTCAGGACCTTCACACGGAGCAGGAGCGGCTGCAGGGGGAGGCACA
AGCGTGGGCCAGGCGCCAAGCGGCTCTGGAGGCTGCAGTGCGCCAGGCCTGTGCCCCTCAGGAGCTGGAG
CGGTTCAGCCGGTTCATGGCCGACCTAGAGCGCGTGCTTGGCCTTCTGCTGCTGCTGGGCAGTCGCCTGG
CGCGCGTGCGCCGCGCCCTGGCCCGGGCGGCCTCAGACAGCGACCCTGATGAGCAGCGACTCCGGCTCCT
GCAGCGGCAGGAGGAGGACGCCAAGGAGCTGAAGGAGCACGTAGCGCGGCGCGAGCGGGCCGTGCGGGAG
GTGCTGGTGCGAGCACTACCGGTGGAGGAGCTGCGCGTCTATTGCGCCCTGCTGGCGGGCAAGGCCGCCG
TCCTGGCCCAGCAGCGCAACCTGGACGAGCGCATCCGCCTCCTTCAGGACCAACTGGACGCCATCAGGGA
CGACCTTGGCCATCATGCCCCGTCTCCCAGCCCGGCGCGGCCCCCAGGGACCTGTCCTCCAGTTCAGCCG
CCCTTCCCTCTTCTCCTTACATAG

Translation (847 aa):
MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDWDYVRVVWGGP
GPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAAEAEAAAQAAEPPSPPASRAA
YRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPPATHPRSASLSHPGGEGEPARSRAPAPGTAG
RGPLANQQRKWCFSEPGKLDRVGRGGGPARECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQ
PQGSMNLDSGSLKLGDAFRPASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSRFLPQK
EAAVMYPAELPQSSPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGPPASVHASDQ
PYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIPTIDPTGLTTN
PPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQCLEELVQELARLDPSLCDPL
ASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAASTFEPGSYQFSFTQLLPAPREETRLENPATHP
VLDQPCGQGLPAPNNSIQGKKVELAARLQKMLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELE
RFSRFMADLERVLGLLLLLGSRLARVRRALARAASDSDPDEQRLRLLQRQEEDAKELKEHVARRERAVRE
VLVRALPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTCPPVQP
PFPLLLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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