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Report for CCDS41629.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41629.1 Public Homo sapiens 11 KCNA4 24 110 108 CCDS HistoryNCBI Gene:3739Re-query CCDS DB by CCDS ID:41629.1Re-query CCDS DB by GeneID:3739See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41629.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328224.7 ENSP00000328511.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328224.7Link to Ensembl Protein Viewer:ENSP00000328511.6Re-query CCDS DB by Nucleotide ID:ENST00000328224Re-query CCDS DB by Protein ID:ENSP00000328511
Original member Current member NCBI NM_002233.4 NP_002224.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002233.4Link to Protein Sequence:NP_002224.1Re-query CCDS DB by Nucleotide ID:NM_002233Re-query CCDS DB by Protein ID:NP_002224Link to BLAST:NP_002224.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002224.1 653 P22459 653 100% 0 0

Chromosomal Locations for CCDS 41629.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 30010717 30012678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1962 nt):
ATGGAGGTTGCAATGGTGAGTGCGGAGAGCTCAGGGTGCAACAGTCACATGCCTTATGGTTATGCTGCCC
AGGCCCGGGCCCGGGAGCGGGAGAGGCTTGCTCACTCCAGGGCAGCTGCAGCAGCTGCTGTTGCAGCGGC
CACAGCTGCTGTCGAAGGTAGCGGGGGTTCTGGTGGGGGCTCCCACCACCACCACCAGTCACGCGGGGCC
TGTACCTCCCATGACCCTCAGAGCAGCCGGGGTAGTCGGAGGAGGAGGCGACAGCGGTCTGAGAAGAAGA
AAGCCCACTACCGGCAGAGCAGCTTCCCTCATTGCTCTGACCTGATGCCCAGTGGCTCTGAGGAGAAGAT
CCTGAGGGAGCTGAGTGAGGAGGAGGAAGATGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGGAAGGTTT
TACTATAGTGAAGATGACCATGGTGATGAGTGTTCCTACACGGATCTGCTGCCTCAGGATGAGGGCGGTG
GCGGCTACAGTTCAGTCCGCTACAGTGACTGTTGTGAACGTGTGGTGATAAATGTGTCAGGCCTACGCTT
TGAGACCCAAATGAAAACTCTGGCCCAGTTTCCAGAGACTTTGTTGGGAGACCCTGAAAAGAGGACTCAG
TACTTTGACCCTTTGCGCAATGAGTATTTTTTTGACAGGAACCGCCCCAGCTTTGATGCCATCTTGTATT
ATTATCAATCAGGAGGCCGCCTGAAGAGGCCAGTCAATGTCCCCTTTGATATCTTCACTGAGGAGGTGAA
GTTCTATCAGTTGGGGGAGGAGGCCCTGTTGAAGTTTCGGGAGGACGAGGGCTTTGTGAGAGAAGAGGAA
GACAGGGCCCTCCCCGAGAATGAATTTAAAAAGCAGATTTGGCTCCTCTTTGAATATCCAGAGAGCTCCA
GTCCTGCAAGGGGCATAGCCATTGTGTCCGTCCTGGTCATCTTAATCTCCATTGTCATCTTTTGCCTGGA
AACCTTGCCTGAGTTTAGGGACGACAGGGATCTCGTCATGGCACTGAGTGCTGGCGGGCATGGTGGGTTG
TTGAATGATACTTCAGCACCCCATCTGGAGAACTCAGGGCACACAATATTCAATGACCCCTTCTTCATCG
TGGAAACAGTCTGTATTGTATGGTTTTCCTTTGAGTTTGTGGTTCGCTGCTTTGCTTGTCCCAGCCAAGC
ACTCTTCTTCAAAAACATCATGAACATCATTGACATTGTCTCCATTTTGCCTTACTTCATCACACTGGGC
ACTGACCTGGCCCAGCAACAGGGGGGTGGCAATGGTCAGCAGCAGCAGGCCATGTCCTTTGCCATCCTCA
GAATCATTCGTCTGGTCCGAGTATTCCGGATCTTCAAACTCTCCAGGCACTCCAAAGGCCTGCAGATCCT
GGGCCACACCCTCAGAGCCAGCATGCGGGAACTGGGCCTTCTGATCTTCTTCCTCTTCATTGGGGTCATC
CTCTTTTCTAGTGCTGTGTATTTTGCAGAGGCGGATGAACCTACTACCCATTTCCAAAGCATCCCAGATG
CATTTTGGTGGGCTGTGGTGACCATGACAACTGTGGGCTATGGGGACATGAAGCCCATCACTGTAGGGGG
CAAGATTGTCGGGTCCCTGTGTGCCATTGCGGGTGTCTTAACCATTGCTTTGCCAGTGCCAGTGATTGTC
TCTAACTTTAACTATTTCTACCACAGAGAGACTGAAAATGAGGAACAGACACAGCTAACGCAGAATGCAG
TCAGTTGTCCATACCTCCCCTCTAATTTGCTCAAGAAATTTCGGAGCTCTACTTCTTCTTCCCTGGGGGA
CAAGTCAGAGTATCTAGAGATGGAAGAAGGAGTTAAGGAATCTCTGTGTGCAAAGGAGGAGAAGTGTCAG
GGAAAGGGGGATGACAGTGAGACAGATAAAAACAACTGTTCTAATGCAAAGGCTGTGGAGACTGATGTGT
GA

Translation (653 aa):
MEVAMVSAESSGCNSHMPYGYAAQARARERERLAHSRAAAAAAVAAATAAVEGSGGSGGGSHHHHQSRGA
CTSHDPQSSRGSRRRRRQRSEKKKAHYRQSSFPHCSDLMPSGSEEKILRELSEEEEDEEEEEEEEEEGRF
YYSEDDHGDECSYTDLLPQDEGGGGYSSVRYSDCCERVVINVSGLRFETQMKTLAQFPETLLGDPEKRTQ
YFDPLRNEYFFDRNRPSFDAILYYYQSGGRLKRPVNVPFDIFTEEVKFYQLGEEALLKFREDEGFVREEE
DRALPENEFKKQIWLLFEYPESSSPARGIAIVSVLVILISIVIFCLETLPEFRDDRDLVMALSAGGHGGL
LNDTSAPHLENSGHTIFNDPFFIVETVCIVWFSFEFVVRCFACPSQALFFKNIMNIIDIVSILPYFITLG
TDLAQQQGGGNGQQQQAMSFAILRIIRLVRVFRIFKLSRHSKGLQILGHTLRASMRELGLLIFFLFIGVI
LFSSAVYFAEADEPTTHFQSIPDAFWWAVVTMTTVGYGDMKPITVGGKIVGSLCAIAGVLTIALPVPVIV
SNFNYFYHRETENEEQTQLTQNAVSCPYLPSNLLKKFRSSTSSSLGDKSEYLEMEEGVKESLCAKEEKCQ
GKGDDSETDKNNCSNAKAVETDV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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