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Report for CCDS41713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41713.1 Public Homo sapiens 11 HOATZ 24 110 108 CCDS HistoryNCBI Gene:399949Re-query CCDS DB by CCDS ID:41713.1Re-query CCDS DB by GeneID:399949See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41713.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375618.9 ENSP00000364768.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375618.9Link to Ensembl Protein Viewer:ENSP00000364768.4Re-query CCDS DB by Nucleotide ID:ENST00000375618Re-query CCDS DB by Protein ID:ENSP00000364768
Original member Current member NCBI NM_001100388.2 NP_001093858.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100388.2Link to Protein Sequence:NP_001093858.1Re-query CCDS DB by Nucleotide ID:NM_001100388Re-query CCDS DB by Protein ID:NP_001093858Link to BLAST:NP_001093858.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093858.1 169 Q6PI97-1 169 100% 0 0

Chromosomal Locations for CCDS 41713.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 111514785 111515010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111515511 111515552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111516040 111516110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111533746 111533805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111534412 111534464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111536770 111536827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGGAAACGGGACCCAGCGAAGAACCTAGCGGCCGAAAAGAGTCCCAGGAAATGTGCCCCCCGGGATTAC
TGGTATTTGCTGGCTCCTCGGAACAAGATGCCAACTTGGCTAAGCAGTTCTGGATCTCGGCGTCGATGTA
TCCCCCTAGCGAATCTCAGCTGGTGCTGCGCAGAGACAGCAGTCAGCGTCTGCCGGTGGCGCGGCCCAGG
AGGAGCAGAGGGTCTGAAAACAGCCACTCCTCGCAGTCTTTTCACCTTGCGAGTAACAAAAATAGAGACA
TCTTTGCCGAAGCCCTAAAGATACAGGAATCTGAGGAGAAAGTAAAGTATCTCCAAAAGGCTAAAACAAG
AGAAGAGATTCTCCAACTCTTAAGAAAACAAAGAGAAGAAAGGATCTCGAAAGAACTGATTTCCCTTCCG
TATAAACCAAAAGCCAAAGAACACAAAGCAAAGAAAGTGGTATCAGAGTCAGATAAAGAGGACCAAGAAG
AAGTCAAAACTTTGGACTAA

Translation (169 aa):
METGPSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWISASMYPPSESQLVLRRDSSQRLPVARPR
RSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKAKTREEILQLLRKQREERISKELISLP
YKPKAKEHKAKKVVSESDKEDQEEVKTLD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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