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Report for CCDS41748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41748.1 Public Homo sapiens 12 RIMKLB 24 110 108 CCDS HistoryNCBI Gene:57494Re-query CCDS DB by CCDS ID:41748.1Re-query CCDS DB by GeneID:57494See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41748.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357529.7 ENSP00000350136.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357529.7Link to Ensembl Protein Viewer:ENSP00000350136.3Re-query CCDS DB by Nucleotide ID:ENST00000357529Re-query CCDS DB by Protein ID:ENSP00000350136
Original member Current member EBI ENST00000538135.5 ENSP00000440943.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538135.5Link to Ensembl Protein Viewer:ENSP00000440943.1Re-query CCDS DB by Nucleotide ID:ENST00000538135Re-query CCDS DB by Protein ID:ENSP00000440943
Original member Current member EBI ENST00000535829.6 ENSP00000445863.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000535829.6Link to Ensembl Protein Viewer:ENSP00000445863.1Re-query CCDS DB by Nucleotide ID:ENST00000535829Re-query CCDS DB by Protein ID:ENSP00000445863
Original member Current member NCBI NM_001297776.2 NP_001284705.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001297776.2Link to Protein Sequence:NP_001284705.1Re-query CCDS DB by Nucleotide ID:NM_001297776Re-query CCDS DB by Protein ID:NP_001284705Link to BLAST:NP_001284705.1
Original member Current member NCBI NM_001352267.2 NP_001339196.1 Accepted alive Link to Nucleotide Sequence:NM_001352267.2Link to Protein Sequence:NP_001339196.1Re-query CCDS DB by Nucleotide ID:NM_001352267Re-query CCDS DB by Protein ID:NP_001339196Link to BLAST:NP_001339196.1
Original member Current member NCBI NM_001352268.2 NP_001339197.1 Accepted alive Link to Nucleotide Sequence:NM_001352268.2Link to Protein Sequence:NP_001339197.1Re-query CCDS DB by Nucleotide ID:NM_001352268Re-query CCDS DB by Protein ID:NP_001339197Link to BLAST:NP_001339197.1
Original member Current member NCBI NM_001352269.2 NP_001339198.1 Accepted alive Link to Nucleotide Sequence:NM_001352269.2Link to Protein Sequence:NP_001339198.1Re-query CCDS DB by Nucleotide ID:NM_001352269Re-query CCDS DB by Protein ID:NP_001339198Link to BLAST:NP_001339198.1
Original member Current member NCBI NM_001352270.2 NP_001339199.1 Accepted alive Link to Nucleotide Sequence:NM_001352270.2Link to Protein Sequence:NP_001339199.1Re-query CCDS DB by Nucleotide ID:NM_001352270Re-query CCDS DB by Protein ID:NP_001339199Link to BLAST:NP_001339199.1
Original member Current member NCBI NM_001352271.2 NP_001339200.1 Accepted alive Link to Nucleotide Sequence:NM_001352271.2Link to Protein Sequence:NP_001339200.1Re-query CCDS DB by Nucleotide ID:NM_001352271Re-query CCDS DB by Protein ID:NP_001339200Link to BLAST:NP_001339200.1
Original member Current member NCBI NM_020734.5 NP_065785.2 Accepted alive Link to Nucleotide Sequence:NM_020734.5Link to Protein Sequence:NP_065785.2Re-query CCDS DB by Nucleotide ID:NM_020734Re-query CCDS DB by Protein ID:NP_065785Link to BLAST:NP_065785.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284705.1 386 Q9ULI2-1 386 100% 0 0
NP_001339196.1 386 Q9ULI2-1 386 100% 0 0
NP_001339197.1 386 Q9ULI2-1 386 100% 0 0
NP_001339198.1 386 Q9ULI2-1 386 100% 0 0
NP_001339199.1 386 Q9ULI2-1 386 100% 0 0
NP_001339200.1 386 Q9ULI2-1 386 100% 0 0
NP_065785.2 386 Q9ULI2-1 386 100% 0 0

Chromosomal Locations for CCDS 41748.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 8713867 8714041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8749862 8750092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8751957 8752043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8753890 8754093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8773321 8773784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGTGTAGTTCTGTGGCTGCCAAGTTGTGGTTTTTGACAGATCGTCGCATCAGGGAAGACTATCCTCAAA
AAGAGATTTTACGAGCATTGAAGGCCAAATGTTGTGAGGAGGAACTGGACTTTAGGGCTGTGGTGATGGA
TGAGGTGGTGCTGACAATCGAGCAAGGAAACCTGGGTCTGCGGATCAATGGAGAGCTAATCACTGCCTAC
CCACAAGTGGTGGTAGTCAGAGTACCAACCCCTTGGGTGCAAAGTGATAGTGACATCACTGTTTTGCGCC
ATCTAGAGAAGATGGGATGTCGGTTAATGAACCGACCTCAAGCCATCCTGAACTGCGTTAATAAGTTCTG
GACATTTCAAGAGTTGGCTGGCCATGGTGTTCCTCTGCCGGATACTTTCTCTTATGGTGGCCACGAAAAT
TTTGCTAAAATGATTGATGAGGCTGAAGTTCTGGAGTTCCCAATGGTAGTAAAGAATACGCGGGGTCACA
GAGGTAAAGCTGTTTTCTTGGCTCGAGATAAGCACCATTTGGCTGATCTAAGCCATCTTATTCGCCATGA
AGCGCCATACCTGTTCCAGAAGTATGTTAAAGAGTCTCATGGACGGGATGTACGTGTCATTGTCGTGGGA
GGCCGTGTGGTTGGCACCATGTTACGTTGTTCAACAGATGGGAGAATGCAAAGCAACTGCTCATTAGGTG
GTGTGGGGATGATGTGCTCATTGAGTGAACAAGGGAAGCAGCTAGCTATCCAGGTGTCTAATATCCTGGG
GATGGATGTGTGTGGCATTGATCTGCTGATGAAAGATGACGGCTCCTTCTGCGTCTGTGAGGCCAATGCA
AATGTAGGTTTCATCGCCTTTGATAAGGCTTGTAATCTAGATGTAGCTGGTATCATAGCAGACTATGCCG
CCTCCCTTCTACCCTCTGGCCGGCTCACCCGGCGTATGTCCCTGCTCTCCGTGGTGTCCACTGCCAGTGA
GACTAGTGAGCCGGAGCTGGGTCCCCCAGCCAGCACTGCTGTTGACAACATGAGTGCAAGTTCCAGCTCT
GTTGACAGCGACCCTGAAAGCACGGAGCGAGAGCTGCTCACCAAGCTCCCAGGGGGCCTGTTCAACATGA
ACCAGCTGCTAGCCAATGAAATCAAACTACTGGTGGACTGA

Translation (386 aa):
MCSSVAAKLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTIEQGNLGLRINGELITAY
PQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQELAGHGVPLPDTFSYGGHEN
FAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHEAPYLFQKYVKESHGRDVRVIVVG
GRVVGTMLRCSTDGRMQSNCSLGGVGMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANA
NVGFIAFDKACNLDVAGIIADYAASLLPSGRLTRRMSLLSVVSTASETSEPELGPPASTAVDNMSASSSS
VDSDPESTERELLTKLPGGLFNMNQLLANEIKLLVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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