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Report for CCDS4176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4176.1 Public Homo sapiens 5 JADE2 24 110 108 CCDS HistoryNCBI Gene:23338Re-query CCDS DB by CCDS ID:4176.1Re-query CCDS DB by GeneID:23338See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4176.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395003.5 ENSP00000378451.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395003.5Link to Ensembl Protein Viewer:ENSP00000378451.1Re-query CCDS DB by Nucleotide ID:ENST00000395003Re-query CCDS DB by Protein ID:ENSP00000378451
Original member Current member NCBI NM_015288.6 NP_056103.4 Accepted alive Link to Nucleotide Sequence:NM_015288.6Link to Protein Sequence:NP_056103.4Re-query CCDS DB by Nucleotide ID:NM_015288Re-query CCDS DB by Protein ID:NP_056103Link to BLAST:NP_056103.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056103.4 790 Q9NQC1-1 790 100% 0 0

Chromosomal Locations for CCDS 4176.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134535858 134535915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134537989 134538083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134552052 134552209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134559830 134559990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134560746 134560957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134562200 134562367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134564494 134564610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134566116 134566580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134573645 134573762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134578497 134579317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGGAAGAGAAGAGGCGAAAATACTCCATCAGCAGTGACAACTCTGACACCACTGACAGTCATGCGACAT
CTACATCCGCATCAAGATGCTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGCCCCGACAGAACGAAAA
GAAGCCCTCCGAGGTTTTCCGGACAGACTTGATCACAGCCATGAAGATCCCGGACTCATACCAGCTCAGC
CCGGATGACTACTACATCCTGGCAGACCCATGGCGACAGGAATGGGAGAAAGGTGTGCAGGTGCCTGCCG
GGGCAGAGGCCATCCCAGAGCCCGTGGTGAGGATCCTCCCACCACTGGAAGGCCCCCCTGCCCAGGCATC
CCCGAGCAGCACCATGCTTGGTGAGGGCTCCCAGCCTGATTGGCCAGGGGGCAGCCGCTATGACTTGGAC
GAGATTGATGCCTACTGGCTGGAGCTCATCAACTCGGAGCTTAAGGAGATGGAGAGGCCGGAGCTGGACG
AGCTGACATTAGAGCGTGTGCTGGAGGAGCTGGAGACCCTGTGCCACCAGAATATGGCCAGGGCCATTGA
GACGCAGGAGGGGCTGGGCATCGAGTACGACGAGGATGTTGTCTGCGACGTGTGTCGCTCTCCTGAGGGC
GAGGATGGCAACGAGATGGTCTTCTGTGACAAGTGCAACGTCTGTGTGCATCAGGCATGCTACGGGATCC
TCAAGGTGCCCACGGGCAGCTGGCTGTGCCGGACGTGTGCCCTGGGTGTCCAGCCAAAGTGCCTGCTCTG
CCCCAAGCGAGGAGGAGCCTTGAAGCCCACTAGAAGTGGGACCAAGTGGGTGCATGTCAGCTGTGCCCTA
TGGATTCCTGAGGTCAGCATCGGCTGCCCAGAGAAGATGGAGCCCATCACCAAGATCTCGCATATCCCAG
CCAGCCGCTGGGCTCTGTCCTGCAGCCTCTGCAAGGAATGCACAGGCACCTGCATCCAGTGTTCCATGCC
TTCCTGCGTCACAGCGTTCCATGTCACATGCGCCTTTGACCACGGCCTGGAAATGCGGACTATATTAGCA
GACAACGATGAGGTCAAGTTCAAGTCATTCTGCCAGGAGCACAGTGACGGGGGCCCACGTAATGAGCCCA
CATCTGAGCCCACGGAACCCAGCCAGGCTGGCGAGGACCTGGAAAAGGTGACCCTGCGCAAGCAGCGGCT
GCAGCAGCTAGAGGAGGACTTCTACGAGCTGGTGGAGCCGGCTGAGGTGGCTGAGCGGCTGGACCTGGCT
GAGGCACTGGTCGACTTCATCTACCAGTACTGGAAGCTGAAGAGGAAAGCCAATGCCAACCAGCCGCTGC
TGACCCCCAAGACCGACGAGGTGGACAACCTGGCCCAGCAGGAGCAGGACGTCCTCTACCGCCGCCTGAA
GCTCTTCACCCATCTGCGGCAGGACCTAGAGAGGGTTAGAAATCTGTGCTACATGGTGACAAGGCGCGAG
AGAACGAAACACGCCATCTGCAAACTCCAGGAGCAGATATTCCACCTGCAGATGAAACTTATTGAACAGG
ATCTGTGTCGAGGCCTGTCCACCTCATTCCCCATCGATGGCACCTTCTTCAACAGCTGGCTGGCACAGTC
GGTGCAGATCACAGCAGAGAACATGGCCATGAGCGAGTGGCCACTGAACAATGGGCACCGCGAGGACCCT
GCTCCAGGGCTGCTGTCAGAGGAACTGCTGCAGGACGAGGAGACACTGCTCAGCTTCATGCGGGACCCCT
CGCTGCGACCTGGTGACCCTGCTAGGAAGGCCCGAGGCCGCACCCGCCTGCCTGCCAAGAAGAAACCACC
ACCACCACCACCGCAGGACGGGCCTGGTTCACGGACGACTCCAGACAAAGCCCCCAAGAAGACCTGGGGC
CAGGATGCAGGCAGTGGCAAGGGGGGTCAAGGGCCACCTACCAGGAAGCCACCACGTCGGACATCTTCTC
ACTTGCCGTCCAGCCCTGCAGCCGGGGACTGTCCCATCCTAGCCACCCCTGAAAGCCCCCCGCCACTGGC
CCCTGAGACCCCGGACGAGGCAGCCTCAGTAGCTGCTGACTCAGATGTCCAAGTGCCTGGCCCTGCAGCA
AGCCCTAAGCCTTTGGGCCGGCTCCGGCCACCCCGCGAGAGCAAGGTAACCCGGAGATTGCCGGGTGCCA
GGCCTGATGCTGGGATGGGACCACCTTCAGCTGTGGCTGAGAGGCCCAAGGTCAGCCTGCATTTTGACAC
TGAGACTGATGGCTACTTCTCTGATGGGGAGATGAGCGACTCAGATGTAGAGGCCGAGGACGGTGGGGTG
CAGCGGGGTCCCCGGGAGGCAGGGGCAGAGGAGGTGGTCCGCATGGGCGTACTGGCCTCCTAA

Translation (790 aa):
MEEKRRKYSISSDNSDTTDSHATSTSASRCSKLPSSTKSGWPRQNEKKPSEVFRTDLITAMKIPDSYQLS
PDDYYILADPWRQEWEKGVQVPAGAEAIPEPVVRILPPLEGPPAQASPSSTMLGEGSQPDWPGGSRYDLD
EIDAYWLELINSELKEMERPELDELTLERVLEELETLCHQNMARAIETQEGLGIEYDEDVVCDVCRSPEG
EDGNEMVFCDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKRGGALKPTRSGTKWVHVSCAL
WIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKECTGTCIQCSMPSCVTAFHVTCAFDHGLEMRTILA
DNDEVKFKSFCQEHSDGGPRNEPTSEPTEPSQAGEDLEKVTLRKQRLQQLEEDFYELVEPAEVAERLDLA
EALVDFIYQYWKLKRKANANQPLLTPKTDEVDNLAQQEQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRE
RTKHAICKLQEQIFHLQMKLIEQDLCRGLSTSFPIDGTFFNSWLAQSVQITAENMAMSEWPLNNGHREDP
APGLLSEELLQDEETLLSFMRDPSLRPGDPARKARGRTRLPAKKKPPPPPPQDGPGSRTTPDKAPKKTWG
QDAGSGKGGQGPPTRKPPRRTSSHLPSSPAAGDCPILATPESPPPLAPETPDEAASVAADSDVQVPGPAA
SPKPLGRLRPPRESKVTRRLPGARPDAGMGPPSAVAERPKVSLHFDTETDGYFSDGEMSDSDVEAEDGGV
QRGPREAGAEEVVRMGVLAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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