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Report for CCDS41772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41772.1 Public Homo sapiens 12 GXYLT1 24 110 108 CCDS HistoryNCBI Gene:283464Re-query CCDS DB by CCDS ID:41772.1Re-query CCDS DB by GeneID:283464See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41772.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398675.8 ENSP00000381666.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398675.8Link to Ensembl Protein Viewer:ENSP00000381666.3Re-query CCDS DB by Nucleotide ID:ENST00000398675Re-query CCDS DB by Protein ID:ENSP00000381666
Original member Current member NCBI NM_173601.2 NP_775872.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173601.2Link to Protein Sequence:NP_775872.1Re-query CCDS DB by Nucleotide ID:NM_173601Re-query CCDS DB by Protein ID:NP_775872Link to BLAST:NP_775872.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775872.1 440 Q4G148-1 440 100% 0 0

Chromosomal Locations for CCDS 41772.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 42087786 42087947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42097442 42097614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42097910 42098033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42105818 42106069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42109566 42109691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42119000 42119171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42129759 42129851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 42144426 42144646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGCGGCGCTACCTGCGCGTCGTGGTGCTGTGTGTGGCCTGCGGCTTCTGCTCGCTCCTTTACGCTTTCA
GCCAGCTCGCCGTGTCCCTGGAAGAAGGAACGGGCGGCGGTGGCGGGAAGCCGCAGGCCGCGGTGGCTTC
CTGGCTCGCGGGCGGCGGACGCGGCGCCGTGAGAGGCGCCGGCGTCGCGGGCCCCGCAGCGCATCCCGGC
GTGTCGGACAGGTGTAAAGATTTCTCTCTGTGTTACTGGAATCCCTATTGGATGCTGCCCTCTGATGTTT
GTGGAATGAACTGCTTTTGGGAAGCGGCTTTTAGGTACAGTCTGAAAATACAGCCTGTTGAGAAAATGCA
TCTAGCTGTAGTTGCCTGTGGTGAAAGACTGGAAGAAACTATGACCATGTTGAAGTCAGCTATCATTTTC
AGCATCAAACCTCTTCAATTCCATATTTTTGCTGAAGATCAGCTACATCATAGCTTTAAAGGCAGACTTG
ACAACTGGTCATTTCTACAAACATTTAATTATACGTTATACCCCATAACCTTTCCAAGTGAGAATGCAGC
AGAGTGGAAAAAACTCTTTAAACCATGTGCTTCGCAGAGATTGTTCTTGCCGTTAATCCTGAAAGAAGTT
GACTCACTATTGTATGTCGACACTGATATCCTTTTTTTACGACCAGTTGATGATATTTGGTCTTTACTAA
AGAAATTTAATTCCACACAAATTGCTGCAATGGCACCAGAACATGAGGAACCTCGAATAGGATGGTATAA
TCGCTTTGCTAGGCATCCATATTATGGAAAAACTGGAGTAAACTCTGGAGTTATGTTGATGAACATGACT
CGAATGAGAAGGAAGTATTTCAAGAATGATATGACAACTGTACGACTACAATGGGGAGATATACTTATGC
CATTGCTTAAAAAATACAAACTAAACATCACATGGGGTGATCAAGATCTATTGAATATCGTGTTTTTTCA
TAATCCAGAAAGCCTTTTTGTTTTTCCGTGTCAATGGAATTATCGACCAGATCATTGTATATATGGAAGC
AATTGCCAAGAAGCAGAAGAAGGAGGAATCTTTATTCTTCATGGGAACAGAGGTGTTTACCATGACGATA
AGCAACCAGCATTTAGAGCTGTTTATGAAGCACTGAGAAATTGTTCTTTTGAAGATGACAACATCCGTTC
CTTATTAAAACCTTTAGAACTGGAACTACAAAAAACAGTGCATACATACTGTGGAAAAATTTACAAAATA
TTTATCAAACAACTAGCAAAAAGTGTAAGAGATCGTTATGCCAGATCACCAAAGGAAAAGTGA

Translation (440 aa):
MRRYLRVVVLCVACGFCSLLYAFSQLAVSLEEGTGGGGGKPQAAVASWLAGGGRGAVRGAGVAGPAAHPG
VSDRCKDFSLCYWNPYWMLPSDVCGMNCFWEAAFRYSLKIQPVEKMHLAVVACGERLEETMTMLKSAIIF
SIKPLQFHIFAEDQLHHSFKGRLDNWSFLQTFNYTLYPITFPSENAAEWKKLFKPCASQRLFLPLILKEV
DSLLYVDTDILFLRPVDDIWSLLKKFNSTQIAAMAPEHEEPRIGWYNRFARHPYYGKTGVNSGVMLMNMT
RMRRKYFKNDMTTVRLQWGDILMPLLKKYKLNITWGDQDLLNIVFFHNPESLFVFPCQWNYRPDHCIYGS
NCQEAEEGGIFILHGNRGVYHDDKQPAFRAVYEALRNCSFEDDNIRSLLKPLELELQKTVHTYCGKIYKI
FIKQLAKSVRDRYARSPKEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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