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Report for CCDS41781.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
41781.2 |
Public |
Homo sapiens |
12 |
NCKAP5L |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:57701](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:41781.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:57701](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 41781.1 |
The coding region has been updated to represent an alternative splice pattern, and to extend the N- and C-termini based on available transcript and homologous protein data. There are no full-length mRNAs representing the update in human, but this can be constructed from tiled transcripts, including CN359946.1, CN359941.1 and BC033253.1, with support from the full-length mouse mRNA, BC110599.2. |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 41781.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000335999.7 |
ENSP00000337998.6 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000335999.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000337998.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000335999](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000337998](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001037806.4 |
NP_001032895.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001037806.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001032895.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001037806](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001032895](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001032895.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001368048.1 |
NP_001354977.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001368048.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001354977.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001368048](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001354977](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001354977.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 41781.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4005 nt): ATGTCAGAGGCCATGGACCAGCCAGCTGGGGGTCCTGGAAACCCAAGGCCAGGAGAGGGTGATGATGGCA GCATGGAGCCAGGCACCTGCCAGGAGCTTCTGCACCGACTGCGGGAGCTGGAGGCAGAGAACTCGGCACT TGCCCAGGCCAACGAAAACCAGCGGGAGACTTATGAGCGCTGTCTGGACGAGGTTGCCAACCATGTGGTA CAGGCGTTGCTGAACCAGAAGGACCTGCGAGAGGAGTGCATCAAGCTGAAGAAGAGAGTGTTTGACCTGG AACGGCAGAACCAGATGCTGAGTGCCCTGTTTCAGCAGAAACTCCAGCTCACGACAGGCTCGCTCCCTCA GATCCCACTCACTCCACTCCAGCCACCATCAGAGCCACCAGCCTCCCCCTCCCTGAGCTCCACTGAGGGA CCGGCTGCCCCGCTGCCTCTGGGGCACTGTGCTGGGCAGAGAGAGGTATGTTGGGAGCAGCAGCTGAGGC CAGGAGGCCCAGGCCCCCCAGCCGCCCCACCCCCAGCGCTGGATGCCCTATCCCCGTTCCTTCGGAAGAA GGCCCAGATTCTGGAGGTGCTGAGAGCCCTGGAAGAGACTGACCCCTTGCTTCTCTGCTCACCTGCCACC CCCTGGCGGCCTCCAGGCCAGGGGCCTGGCTCCCCAGAGCCCATCAACGGCGAGCTGTGTGGCCCGCCTC AGCCTGAACCCTCACCCTGGGCGCCCTGCCTGCTGCTAGGCCCTGGCAACCTGGGAGGCCTGCTGCACTG GGAGCGCCTCTTGGGGGGTCTGGGAGGGGAAGAGGACACTGGGCGGCCCTGGGGTCCTAGCAGGGGACCT CCTCAGGCCCAGGGCACCAGCTCTGGCCCAAACTGTGCCCCAGGCAGCAGCTCCTCCTCCTCTTCTGATG AGGCAGGTGACCCCAATGAGGCACCCAGCCCCGACACCCTGCTCGGTGCCCTGGCCCGCAGACAGTTGAA CCTGGGCCAGCTCCTTGAGGACACAGAGTCTTACCTACAGGCCTTCCTGGCCGGGGCTGCAGGCCCACTC AATGGGGACCACCCAGGTCCTGGGCAGTCATCCTCCCCAGACCAGGCGCCCCCACAGCTGTCTAAGTCCA AAGGCCTCCCCAAGTCAGCTTGGGGTGGGGGTACCCCAGAGGCCCACAGGCCAGGCTTCGGTGCTACCTC AGAGGGCCAGGGGCCCCTCCCCTTCCTTAGCATGTTCATGGGTGCTGGGGATGCCCCACTGGGCTCTCGG CCTGGCCACCCCCATTCCTCATCTCAGGTGAAAAGCAAGCTCCAAATTGGCCCCCCTTCTCCTGGGGAAG CTCAGGGACCCCTTCTGCCCTCTCCAGCTAGGGGTCTCAAGTTTCTAAAGCTGCCTCCAACCTCGGAGAA GAGCCCCAGCCCAGGAGGCCCGCAGCTCAGTCCCCAGCTCCCCCGGAACTCGCGAATCCCCTGTCGGAAC AGTGGCTCAGACGGCAGCCCCTCCCCACTGTTGGCCCGAAGGGGTCTGGGTGGAGGAGAGCTGTCCCCAG AGGGGGCGCAAGGCCTGCCCACCAGCCCTTCACCCTGCTACACAACCCCAGACTCCACACAGCTCAGACC CCCGCAGTCAGCCTTGTCCACCACGCTGTCCCCAGGCCCAGTGGTGTCTCCCTGCTATGAGAACATTCTG GACCTTTCTCGGAGCACCTTTAGGGGGCCTTCCCCAGAGCCACCTCCATCCCCACTGCAGGTGCCCACCT ACCCACAGCTAACTCTGGAGGTACCACAGGCCCCTGAGGTCCTCAGAAGCCCTGGAGTACCCCCCAGTCC TTGCCTCCCAGAATCGTACCCCTATGGGAGCCCCCAAGAGAAGAGTTTGGACAAGGCAGGCTCGGAGTCT CCCCATCCCGGCCGCAGGACCCCAGGCAACTCATCCAAGAAGCCCAGCCAGGGGTCAGGACGGCGACCTG GGGATCCTGGCAGCACACCTCTGCGGGACAGACTGGCGGCCCTGGGGAAGCTGAAGACAGGCCCCGAGGG GGCCCTGGGCTCAGAGAAGAATGGGGTGCCAGCCAGGCCTGGCACCGAAAAGACCCGGGGACCTGGGAAG TCAGGGGAGAGTGCTGGAGACATGGTGCCCTCCATCCACAGGCCACTGGAGCAGCTAGAAGCCAAGGGGG GGATACGGGGGGCAGTGGCCTTGGGCACAAACAGCCTGAAGCAGCAGGAACCTGGACTTATGGGGGATCC CGGGGCCCGAGTCTACTCCTCTCACTCCATGGGGGCCCGGGTGGACCTGGAGCCTGTCTCACCAAGGAGC TGCCTCACCAAAGTGGAGCTGGCCAAGAGCCGGCTGGCAGGGGCCCTGTGCCCCCAGGTACCCCGTACCC CTGCCAAAGTGCCAACCTCAGCCCCAAGCCTGGGCAAGCCCAATAAGAGCCCTCACAGCAGCCCCACCAA GCTCCCTTCCAAGTCACCAACCAAGGTGGTGCCTCGACCTGGGGCTCCGCTAGTCACCAAGGAGTCCCCC AAGCCTGACAAAGGGAAGGGCCCTCCCTGGGCAGACTGTGGTAGTACCACGGCCCAGTCCACACCCCTAG TACCTGGCCCCACTGACCCAAGTCAGGGCCCTGAGGGGCTGGCCCCACACTCAGCCATCGAGGAGAAGGT GATGAAGGGCATTGAGGAGAACGTGCTGCGGCTCCAGGGCCAGGAGCGAGCCCCTGGCGCCGAGGTCAAG CACCGCAACACCAGCAGCATCGCCAGCTGGTTCGGCCTTAAGAAGAGCAAGCTGCCAGCGCTGAACCGCC GCACAGAGGCCACCAAGAACAAGGAGGGGGCTGGCGGGGGCTCCCCGCTCCGGAGGGAAGTCAAGATGGA AGCCCGGAAGCTGGAGGCCGAGAGCCTCAACATCTCCAAGCTGATGGCCAAGGCGGAAGACCTGCGTCGG GCACTGGAAGAGGAGAAGGCCTACCTAAGCAGCCGGGCCCGGCCACGGCCTGGTGGCCCAGCCCCAGGGC CCAACACGGGGCTGGGGCAGGTGCAGGGCCAGCTGGCTGGCATGTACCAAGGTGCAGACACCTTCATGCA GCAGCTGCTAAACAGGGTGGATGGCAAGGAGCTGCCATCCAAGAGCTGGCGGGAGCCCAAGCCTGAGTAC GGGGATTTCCAGCCGGTGTCTTCTGACCCCAAGAGCCCCTGGCCAGCCTGTGGGCCCCGGAATGGCCTGG TGGGCCCTCTTCAGGGCTGCGGAAAACCTCCTGGAAAGCCGAGCAGCGAGCCAGGGAGGCGGGAAGAGAT GCCCTCGGAGGACAGCCTGGCCGAGCCAGTGCCCACCTCACACTTCACAGCCTGTGGCTCCTTGACTCGA ACCTTGGACAGTGGCATTGGGACCTTCCCACCCCCAGACCATGGTAGCAGTGGGACCCCCAGCAAGAATC TTCCTAAGACCAAGCCACCGCGGCTGGATCCCCCACCTGGGGTACCCCCAGCTCGGCCCCCACCCCTTAC CAAAGTCCCCCGCCGCGCCCACACACTGGAGCGGGAGGTGCCAGGCATAGAGGAGCTGCTGGTGAGTGGG CGGCACCCCAGCATGCCAGCCTTCCCTGCACTGCTACCCGCTGCTCCGGGCCACCGGGGCCATGAGACCT GTCCTGATGATCCCTGTGAAGACCCAGGCCCCACCCCTCCTGTCCAGCTGGCCAAGAACTGGACCTTCCC CAATACTAGGGCAGCCGGCAGCTCCTCGGACCCTCTCATGTGCCCACCCCGACAACTGGAGGGGCTGCCC AGGACCCCCATGGCCCTGCCCGTGGACCGGAAGCGAAGCCAGGAGCCCAGCCGCCCGTCCCCTACGCCCC AGGGCCCACCTTTCGGGGGTAGCCGCACCCCCAGCACTTCGGACATGGCCGAGGAAGGCAGAGTGGCCAG CGGGGGCCCCCCAGGGCTGGAGACCTCGGAGTCTCTCAGTGACTCACTCTACGACTCGCTGTCCTCTTGT GGGAGTCAGGGCTGA
Translation (1334 aa): MSEAMDQPAGGPGNPRPGEGDDGSMEPGTCQELLHRLRELEAENSALAQANENQRETYERCLDEVANHVV QALLNQKDLREECIKLKKRVFDLERQNQMLSALFQQKLQLTTGSLPQIPLTPLQPPSEPPASPSLSSTEG PAAPLPLGHCAGQREVCWEQQLRPGGPGPPAAPPPALDALSPFLRKKAQILEVLRALEETDPLLLCSPAT PWRPPGQGPGSPEPINGELCGPPQPEPSPWAPCLLLGPGNLGGLLHWERLLGGLGGEEDTGRPWGPSRGP PQAQGTSSGPNCAPGSSSSSSSDEAGDPNEAPSPDTLLGALARRQLNLGQLLEDTESYLQAFLAGAAGPL NGDHPGPGQSSSPDQAPPQLSKSKGLPKSAWGGGTPEAHRPGFGATSEGQGPLPFLSMFMGAGDAPLGSR PGHPHSSSQVKSKLQIGPPSPGEAQGPLLPSPARGLKFLKLPPTSEKSPSPGGPQLSPQLPRNSRIPCRN SGSDGSPSPLLARRGLGGGELSPEGAQGLPTSPSPCYTTPDSTQLRPPQSALSTTLSPGPVVSPCYENIL DLSRSTFRGPSPEPPPSPLQVPTYPQLTLEVPQAPEVLRSPGVPPSPCLPESYPYGSPQEKSLDKAGSES PHPGRRTPGNSSKKPSQGSGRRPGDPGSTPLRDRLAALGKLKTGPEGALGSEKNGVPARPGTEKTRGPGK SGESAGDMVPSIHRPLEQLEAKGGIRGAVALGTNSLKQQEPGLMGDPGARVYSSHSMGARVDLEPVSPRS CLTKVELAKSRLAGALCPQVPRTPAKVPTSAPSLGKPNKSPHSSPTKLPSKSPTKVVPRPGAPLVTKESP KPDKGKGPPWADCGSTTAQSTPLVPGPTDPSQGPEGLAPHSAIEEKVMKGIEENVLRLQGQERAPGAEVK HRNTSSIASWFGLKKSKLPALNRRTEATKNKEGAGGGSPLRREVKMEARKLEAESLNISKLMAKAEDLRR ALEEEKAYLSSRARPRPGGPAPGPNTGLGQVQGQLAGMYQGADTFMQQLLNRVDGKELPSKSWREPKPEY GDFQPVSSDPKSPWPACGPRNGLVGPLQGCGKPPGKPSSEPGRREEMPSEDSLAEPVPTSHFTACGSLTR TLDSGIGTFPPPDHGSSGTPSKNLPKTKPPRLDPPPGVPPARPPPLTKVPRRAHTLEREVPGIEELLVSG RHPSMPAFPALLPAAPGHRGHETCPDDPCEDPGPTPPVQLAKNWTFPNTRAAGSSSDPLMCPPRQLEGLP RTPMALPVDRKRSQEPSRPSPTPQGPPFGGSRTPSTSDMAEEGRVASGGPPGLETSESLSDSLYDSLSSC GSQG
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