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Report for CCDS41817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41817.1 Public Homo sapiens 12 ATP2B1 24 110 108 CCDS HistoryNCBI Gene:490Re-query CCDS DB by CCDS ID:41817.1Re-query CCDS DB by GeneID:490See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41817.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359142.8 ENSP00000352054.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359142.8Link to Ensembl Protein Viewer:ENSP00000352054.3Re-query CCDS DB by Nucleotide ID:ENST00000359142Re-query CCDS DB by Protein ID:ENSP00000352054
Original member Current member EBI ENST00000551310.2 ENSP00000447041.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000551310.2Link to Ensembl Protein Viewer:ENSP00000447041.2Re-query CCDS DB by Nucleotide ID:ENST00000551310Re-query CCDS DB by Protein ID:ENSP00000447041
Original member Current member NCBI NM_001001323.2 NP_001001323.1 Accepted alive Link to Nucleotide Sequence:NM_001001323.2Link to Protein Sequence:NP_001001323.1Re-query CCDS DB by Nucleotide ID:NM_001001323Re-query CCDS DB by Protein ID:NP_001001323Link to BLAST:NP_001001323.1
Original member Current member NCBI NM_001366523.1 NP_001353452.1 Accepted alive Link to Nucleotide Sequence:NM_001366523.1Link to Protein Sequence:NP_001353452.1Re-query CCDS DB by Nucleotide ID:NM_001366523Re-query CCDS DB by Protein ID:NP_001353452Link to BLAST:NP_001353452.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001323.1 1176 P20020-2 1176 100% 0 0
NP_001353452.1 1176 P20020-2 1176 100% 0 0

Chromosomal Locations for CCDS 41817.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 89591270 89591295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89598590 89598743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89599117 89599299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89601326 89601433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89603043 89603254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89603712 89603925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89604155 89604346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89609937 89610043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89610421 89610508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89611193 89611372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89616802 89617039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89619999 89620240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89621549 89621791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89624183 89624397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89626454 89626615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89627678 89627716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89630505 89630645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89634778 89634903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89634997 89635251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89642158 89642355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 89655679 89655886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3531 nt):
ATGGGCGACATGGCAAACAACTCAGTTGCTTACAGTGGTGTGAAAAACTCTTTGAAGGAAGCTAATCATG
AT
GGAGACTTTGGAATTACGCTCGCAGAGCTGCGGGCTCTCATGGAGCTCAGGTCCACAGATGCATTACG
A
AAAATACAGGAAAGCTATGGAGATGTCTATGGAATTTGCACCAAATTGAAAACATCTCCCAATGAAGGT
TTA
AGTGGAAACCCTGCAGATTTAGAAAGAAGAGAAGCAGTGTTTGGAAAGAATTTTATACCTCCTAAAA
AG
CCAAAAACCTTTCTTCAATTAGTATGGGAAGCATTACAAGATGTCACTTTAATTATATTAGAAATTGC
A
GCCATAGTATCATTGGGCCTTTCTTTTTATCAGCCTCCAGAAGGGGATAATGCACTTTGTGGAGAAGTT
TCT
GTTGGGGAGGAAGAAGGTGAAGGTGAAACTGGTTGGATTGAAGGAGCTGCAATCCTCTTGTCTGTAG
TG
TGTGTGGTGTTAGTAACAGCTTTCAATGACTGGAGTAAGGAAAAACAGTTTAGAGGTTTGCAGAGCCG
A
ATTGAACAAGAACAGAAGTTCACTGTCATCAGGGGTGGTCAGGTCATTCAGATACCTGTAGCTGACATT
ACT
GTTGGAGATATTGCTCAAGTGAAATATGGTGATCTTCTTCCAGCTGACGGCATACTTATTCAAGGCA
AC
GATCTTAAAATTGATGAAAGCTCATTGACTGGTGAATCAGATCATGTTAAAAAGTCTTTAGATAAGGA
T
CCCTTACTTCTATCAGGTACTCATGTAATGGAAGGCTCTGGAAGAATGGTAGTTACAGCTGTAGGTGTA
AAT
TCTCAAACTGGAATTATCTTTACCTTACTTGGAGCTGGAGGTGAAGAGGAAGAGAAGAAAGATGAGA
AG
AAAAAGGAAAAGAAAAATAAGAAACAAGATGGAGCTATTGAGAATCGCAACAAAGCAAAAGCCCAGGA
T
GGTGCAGCCATGGAAATGCAGCCATTGAAGAGTGAAGAAGGTGGAGATGGTGATGAAAAAGATAAAAAG
AAA
GCAAATTTGCCAAAAAAGGAAAAATCTGTTTTACAAGGGAAACTTACAAAACTGGCTGTTCAGATTG
GC
AAAGCAGGTCTGTTGATGTCTGCCATCACAGTTATCATTCTAGTATTATATTTTGTCATTGACACCTT
C
TGGGTTCAGAAAAGACCATGGCTTGCTGAGTGCACACCAATTTATATACAATACTTTGTGAAGTTCTTC
ATT
ATTGGAGTTACAGTTTTAGTGGTCGCAGTGCCAGAAGGTCTTCCACTTGCAGTCACGATCTCACTGG
CT
TATTCAGTCAAAAAAATGATGAAAGATAATAACTTAGTAAGGCATCTGGATGCTTGTGAAACCATGGG
A
AATGCTACAGCTATTTGTTCAGATAAAACAGGAACTTTGACAATGAACAGAATGACAGTCGTTCAAGCT
TAC
ATAAATGAAAAACATTATAAAAAGGTTCCTGAACCAGAAGCTATTCCACCAAATATTTTGTCCTATC
TT
GTAACAGGAATTTCTGTGAATTGTGCTTATACATCAAAAATATTGCCACCAGAGAAAGAGGGTGGATT
A
CCTCGTCACGTTGGTAATAAAACTGAATGTGCCTTGTTGGGACTTCTTTTGGATTTAAAACGGGATTAT
CAG
GATGTTAGAAATGAAATACCAGAAGAAGCACTGTACAAAGTCTACACCTTCAATTCTGTTAGGAAGT
CC
ATGAGTACTGTCCTGAAAAATTCAGATGGAAGTTATCGAATATTCAGCAAGGGTGCATCTGAGATAAT
T
CTGAAAAAGTGTTTCAAAATCTTGAGTGCTAATGGTGAGGCAAAAGTATTCAGACCAAGGGACCGTGAT
GAT
ATTGTAAAAACTGTGATTGAACCGATGGCATCAGAAGGCTTGAGAACCATATGTCTTGCATTCAGAG
AT
TTTCCAGCAGGAGAACCAGAACCAGAGTGGGATAATGAAAATGATATTGTCACCGGCCTTACATGCAT
T
GCTGTTGTGGGGATTGAAGATCCTGTGAGACCTGAGGTGCCAGATGCAATTAAAAAGTGTCAGAGGGCT
GGA
ATTACTGTGCGGATGGTCACTGGTGATAATATTAATACTGCTCGGGCCATTGCTACCAAATGTGGTA
TT
TTACATCCTGGGGAAGATTTTCTGTGCCTAGAAGGTAAAGATTTTAACAGAAGAATACGAAATGAAAA
A
GGAGAGATTGAGCAAGAGAGGATAGACAAGATTTGGCCAAAACTTCGAGTACTTGCAAGATCATCTCCT
ACT
GATAAGCATACACTGGTTAAAGGTATAATTGACAGCACTGTCTCAGACCAACGCCAGGTTGTAGCTG
TA
ACTGGTGATGGTACAAATGATGGCCCAGCACTAAAGAAAGCAGATGTTGGATTTGCAATGGGTATTGC
T
GGAACTGATGTAGCTAAAGAAGCATCCGATATTATTCTCACAGATGACAACTTTACAAGCATTGTTAAA
GCA
GTTATGTGGGGACGAAATGTCTATGACAGCATCTCAAAATTCCTTCAGTTCCAACTTACTGTTAATG
TA
GTAGCAGTGATTGTTGCTTTTACGGGCGCCTGCATTACTCAAGACTCACCGCTTAAGGCTGTGCAGAT
G
CTGTGGGTAAACCTCATAATGGATACACTCGCTTCCCTGGCTCTGGCAACGGAACCACCCACTGAGTCT
CTC
TTGCTTCGGAAACCTTATGGTAGAAATAAGCCTCTCATCTCACGTACAATGATGAAGAATATTTTGG
GT
CATGCATTCTATCAACTTGTAGTAGTCTTTACACTCTTATTTGCTGGAGAAAAGTTTTTTGACATTGA
T
AGTGGAAGAAATGCTCCTTTGCATGCTCCTCCTTCAGAACATTATACTATTGTTTTTAATACCTTTGTG
CTG
ATGCAACTTTTCAACGAAATAAATGCCCGGAAAATTCATGGTGAAAGAAATGTATTCGAAGGAATCT
TT
AACAATGCCATCTTCTGCACAATTGTTTTAGGCACTTTTGTGGTACAGATAATAATTGTGCAGTTTGG
T
GGAAAACCTTTCAGTTGTTCAGAACTTTCAATAGAACAGTGGCTATGGTCAATATTCCTAGGAATGGGA
ACA
TTACTCTGGGGCCAGCTTATTTCAACAATTCCAACTAGCCGTTTAAAATTCCTCAAAGAAGCTGGTC
AT
GGAACACAAAAGGAAGAAATACCTGAGGAGGAATTAGCAGAGGATGTTGAAGAGATTGATCACGCTGA
A
AGGGAGTTGCGGCGTGGCCAAATCTTGTGGTTTAGAGGTCTGAACAGAATCCAAACACAGATGGATGTA
GTG
AATGCTTTCCAGAGTGGAAGTTCCATTCAGGGGGCTCTAAGGCGGCAACCCTCCATCGCCAGCCAGC
AT
CATGATGTAACAAATATTTCTACCCCTACACATGTAGTGTTTTCCTCTTCTACTGCTTCTACTACTGT
G
GGGTATTCGAGTGGTGAATGCATTTCGTAG


Translation (1176 aa):
MGDMANNSVAYSGVKNSLKEANHDGDFGITLAELRALMELRSTDALRKIQESYGDVYGICTKLKTSPNEG
L
SGNPADLERREAVFGKNFIPPKKPKTFLQLVWEALQDVTLIILEIAAIVSLGLSFYQPPEGDNA
LCGEV
S
VGEEEGEGETGWIEGAAILLSVVCVVLVTAFNDWSKEKQFRGLQSRIEQEQKFTVIRGGQVIQIPVADI
T
VGDIAQVKY
GDLLPADGILIQGNDLKIDESSLTGESDHVKKSLDKDPLLLSGTHVMEGSGRMVVTAVGV
N
SQTGIIFTLLGAGGEEEEKKDEKKKEKK
NKKQDGAIENRNKAKAQDGAAMEMQPLKSEEGGDGDEKDKK
K
ANLPKKEKSVLQGKLTKLAVQIGKA
GLLMSAITVIILVLYFVIDTFWVQKRPWLAECTPIYIQYFVKFF
I
IGVTVLVVAVPEGLPLAVTISLAYSVK
KMMKDNNLVRHLDACETMGNATAICSDKTGTLTMNRMTVVQA
Y
INEKHYKKVPEPEAIPPNILSYLVTGISVNCAYTSKIL
PPEKEGGLPRHVGNKTECALLGLLLDLKRDY
Q
DVRNEIPEEALYKVYTFNSVRKSMSTVLKNSDGSYRIFSKGASEIILK
KCFKILSANGEAKVFRPRDRD
D
IVKTVIEPMASEGLRTICLAFRDFPAGEPEPEWDNENDIVTGLTCIAVVGIEDPVRPE
VPDAIKKCQRA
G
ITVRMVTGDNINTARAIATKCGILHPGEDFLCLEGKDFNRRIRNEKGE
IEQERIDKIWPKLRVLARSSP
T
DKHTLVK
GIIDSTVSDQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFTSIVK
A
VMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQ
DSPLKAVQMLWVNLIMDTLASLALATEPPTES
L
LLRKPYGRNKPLISRTMMKNILGHAFYQLVVVFTLLFA
GEKFFDIDSGRNAPLHAPPSEHYTIVFNTFV
L
MQLFNEINARKIHGERNVFEGIFNNAIFCTIVLGTFVVQ
IIIVQFGGKPFSCSELSIEQWLWSIFLGMG
T
LLWGQ
LISTIPTSRLKFLKEAGHGTQKEEIPEEELAEDVEEIDHAERELRRGQILWFRGLNRIQTQMDV
V
NAFQSGSSIQGALRRQPSIASQHHDVTNISTPTHVVFSSSTASTTVG
YSSGECIS



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser