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Report for CCDS42041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42041.1 Public Homo sapiens 15 ZNF280D 24 110 108 CCDS HistoryNCBI Gene:54816Re-query CCDS DB by CCDS ID:42041.1Re-query CCDS DB by GeneID:54816See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42041.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000559237.5 ENSP00000454111.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000559237.5Link to Ensembl Protein Viewer:ENSP00000454111.1Re-query CCDS DB by Nucleotide ID:ENST00000559237Re-query CCDS DB by Protein ID:ENSP00000454111
Original member Current member NCBI NM_001002843.3 NP_001002843.1 Accepted alive Link to Nucleotide Sequence:NM_001002843.3Link to Protein Sequence:NP_001002843.1Re-query CCDS DB by Nucleotide ID:NM_001002843Re-query CCDS DB by Protein ID:NP_001002843Link to BLAST:NP_001002843.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002843.1 966 Q6N043-2 966 100% 0 0

Chromosomal Locations for CCDS 42041.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 56631498 56632122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56635195 56635250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56642952 56642997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56654198 56654234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56654385 56654503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56658424 56658486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56666395 56666535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56666679 56666986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56668823 56668957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56676670 56676816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56677574 56677674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56678664 56678821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56682254 56682477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56689041 56689150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56689300 56689470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56693098 56693215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56700933 56701072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56701173 56701238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56704121 56704256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2901 nt):
ATGGCAGAACTGTTTATGGAATGTGAAGAAGAGGAGCTGGAACCATGGCAGAAGAAAGTAAAAGAAGTTG
AGGATGACGATGATGATGAGCCAATCTTTGTTGGCGAGATATCAAGTTCAAAACCAGCAATTTCAAATAT
TTTGAACAGAGTTAACCCCAGCTCATATTCAAGGGGACTAAAGAATGGTGCACTCAGTCGAGGTATTACT
GCTGCATTCAAGCCTACAAGTCAACACTACACGAATCCAACATCAAATCCAGTGCCTGCCTCACCAATAA
ATTTTCATCCTGAGTCTAGATCTTCAGATAGTTCTGTTATTGTTCAGCCTTTTTCTAAACCTGGTTATAT
AACAAACTCATCACGAGTTGTGTCTAATAAGTCATCAGAGTTACTGTTTGACTTGACCCAGGATACAGGA
TTATCACATTACCAAGGGGGACCAACACTTTCTATGGCAGGTATGAGTGAAAGTTCATTTTTATCAAAAC
GTCCTTCTACTTCTGAAGTAAATAATGTTAATCCAAAGAAGCCTAAACCCAGCGAAAGTGTTTCTGGAGC
AAATTCCTCAGCTGTATTACCTTCAGTTAAATCTCCTTCAGTGACTTCTTCCCAGGCTATGCTAGCAAAA
GGTACAAATACCTCATCAAATCAGTCTAAAAATGGAACACCTTTTCCAAGAGCTTGTCCAAAGTGCAACA
TTCATTTCAATCTTTTGGATCCTTTGAAAAATCACATGAAGTATTGTTGTCCAGACATGATAAATAACTT
TTTGGGACTGGCTAAAACAGAATTTTCAAGTACAGTAAATAAAAACACAACTATTGATTCAGAGAAAGGA
AAATTGATCATGTTAGTTAATGACTTTTATTATGGAAAACATGAAGGAGATGTCCAGGAGGAACAGAAGA
CTCACACAACCTTTAAATGCTTCAGTTGCTTGAAAATTCTAAAAAATAACATTAGGTTTATGAACCACAT
GAAACACCATTTGGAACTTGAGAAGCAGAGCAGTGAGAGCTGGGAAAACCATACCACCTGCCAGCACTGC
TACCGTCAGTTTCCCACACCATTTCAGTTGCAGTGTCACATCGAAAGTACACATACGCCCCATGAATTTT
CTACTATTTGTAAAATCTGTGAATTGTCATTTGAAACAGAACATGTTCTTTTACAACATATGAAGGACAA
TCATAAACCTGGTGAAATGCCATATGTCTGCCAGGTTTGTAATTATAGATCATCATCATTTTCTGATGTA
GAAACTCATTTTAGAACATCCCATGAAAACACTAAGAACTTGCTATGCCCGTTTTGCCTCAAAGTTATTA
AAATTGCAACACCATATATGCATCATTATATGAAGCATCAGAAAAAAGGAATACATCGTTGTACAAAATG
CAGGCTGCAGTTTTTGACATGCAAGGAGAAAATGGATCATAAGACTCAACACCATCGAACATTTATAAAA
CCTAAACAACTAGAAGGATTGCCTCCTGGAACAAAAGTTACTATTCGAGCTTCAGTTGGACCTCTGCAAT
CAGGAGCTTCACCTACACCTTCCATTAGTGCAAGTGCTTCTACCCTTCAGCTCTCACCTCCAAGGACTAA
AAATATAACTGCTAAAAATCCTGCAAAATCTAATACAAGTAAACCTAATACAGTCAAATCCAACGCAAGT
AAACCTAATACAAGTAAGCCTAATGGAAGTAAATCTAAATACAAACCAAAAATCTCTAATATGCAAAAGA
AACAAAGCACATTGGCTAGTAGCAATAAAAAAAGTAAAGTCAATACAGCATTGAGGAATTTAAGGTATCG
TCGGGGCATTCACAAATGCATTGAGTGTTGTTCCGAAATAAAAGATTTTGCAAACCACTTTCCTACGTAC
GTCCACTGTAGTTTTTGCAGATACAACACTAGCTGTAGCAAAGCCTATGTAAATCATATGATGAGCTTTC
ATAGTAACCGTCCAAGCAAAAGGTTTTGTATTTTTAAGAAGCATTCAGAAAATCTCCGGGGCATTACTCT
AGTGTGCCTTAATTGTGATTTCCTAAGTGATGTTTCTGGCTTAGATAATATGGCTACACACTTAAGTCAA
CATAAAACTCATACTTGCCAAGTTGTAATGCAGAAAGTTTCTGTTTGTATCCCAACTTCTGAGCACCTTT
CTGAATTAAAAAAAGAAGCTCCCGCAAAGGAACAAGAACCTGTGTCTAAGGAAATTGCAAGACCTAACAT
GGCTGAAAGAGAAACAGAAACATCAAATTCTGAAAGTAAACAAGATAAAGCTGCTTCTTCAAAAGAAAAA
AATGGATGTAATGCAAATTCATTTGAAGGCTCATCAACAACAAAAAGTGAAGAAAGCATAACAGTTTCAG
ATAAGGAAAATGAAACCTGTCTTGCAGACCAGGAAACTGGCTCAAAAAACATCGTCAGTTGTGATTCAAA
TATTGGTGCAGATAAAGTGGAAAAGAAAAAACAAATACAACACGTTTGTCAGGAAATGGAGTTGAAGATG
TGCCAAAGTTCAGAAAACATAATCTTATCTGATCAGATTAAAGATCACAACTCCAGTGAAGCCAGATTTT
CTTCAAAGAATATTAAGGATTTGCGATTAGCATCAGATAATGTAAGCATTGATCAGTTTTTGAGAAAAAG
ACATGAACCTGAATCTGTTAGTTCTGATGTTAGCGAGCAAGGCAGTATTCATTTGGAACCTCTGACTCCA
TCCGAGGTACTTGAGTATGAAGCCACAGAGATTCTTCAGAAAGGTAGTGGTGATCCTTCAGCCAAGACTG
ATGAAGTAGTGTCTGATCAAACAGATGACATTCCTGGAGGAAATAACCCTAGCACAACAGAGGCAACAGT
AGACCTGGAAGACGAAAAAGAAAGAAGTTGA

Translation (966 aa):
MAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNILNRVNPSSYSRGLKNGALSRGIT
AAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVIVQPFSKPGYITNSSRVVSNKSSELLFDLTQDTG
LSHYQGGPTLSMAGMSESSFLSKRPSTSEVNNVNPKKPKPSESVSGANSSAVLPSVKSPSVTSSQAMLAK
GTNTSSNQSKNGTPFPRACPKCNIHFNLLDPLKNHMKYCCPDMINNFLGLAKTEFSSTVNKNTTIDSEKG
KLIMLVNDFYYGKHEGDVQEEQKTHTTFKCFSCLKILKNNIRFMNHMKHHLELEKQSSESWENHTTCQHC
YRQFPTPFQLQCHIESTHTPHEFSTICKICELSFETEHVLLQHMKDNHKPGEMPYVCQVCNYRSSSFSDV
ETHFRTSHENTKNLLCPFCLKVIKIATPYMHHYMKHQKKGIHRCTKCRLQFLTCKEKMDHKTQHHRTFIK
PKQLEGLPPGTKVTIRASVGPLQSGASPTPSISASASTLQLSPPRTKNITAKNPAKSNTSKPNTVKSNAS
KPNTSKPNGSKSKYKPKISNMQKKQSTLASSNKKSKVNTALRNLRYRRGIHKCIECCSEIKDFANHFPTY
VHCSFCRYNTSCSKAYVNHMMSFHSNRPSKRFCIFKKHSENLRGITLVCLNCDFLSDVSGLDNMATHLSQ
HKTHTCQVVMQKVSVCIPTSEHLSELKKEAPAKEQEPVSKEIARPNMAERETETSNSESKQDKAASSKEK
NGCNANSFEGSSTTKSEESITVSDKENETCLADQETGSKNIVSCDSNIGADKVEKKKQIQHVCQEMELKM
CQSSENIILSDQIKDHNSSEARFSSKNIKDLRLASDNVSIDQFLRKRHEPESVSSDVSEQGSIHLEPLTP
SEVLEYEATEILQKGSGDPSAKTDEVVSDQTDDIPGGNNPSTTEATVDLEDEKERS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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