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Report for CCDS42045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42045.1 Public Homo sapiens 15 POLR2M 24 110 108 CCDS HistoryNCBI Gene:81488Re-query CCDS DB by CCDS ID:42045.1Re-query CCDS DB by GeneID:81488See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42045.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380557.4 ENSP00000369930.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380557.4Link to Ensembl Protein Viewer:ENSP00000369930.4Re-query CCDS DB by Nucleotide ID:ENST00000380557Re-query CCDS DB by Protein ID:ENSP00000369930
Original member Current member NCBI NM_001018102.3 NP_001018112.1 Accepted alive Link to Nucleotide Sequence:NM_001018102.3Link to Protein Sequence:NP_001018112.1Re-query CCDS DB by Nucleotide ID:NM_001018102Re-query CCDS DB by Protein ID:NP_001018112Link to BLAST:NP_001018112.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001018112.1 211 P0CAP2-2 211 100% 0 0

Chromosomal Locations for CCDS 42045.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 57706843 57706955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57709185 57709358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57711984 57712188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57714536 57714679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGTGCTCGCTGCCCCGCGGCTTCGAGCCCCAAGCTCCCGAGGACTTGGCGCAGCGGAGTTTGGTGGAGC
TGCGGGAAATGTTGAAGCGCCAGGAGAGACTTTTGCGCAACGAGTTACAGAGGATCACCATTGCGGACCA
AGGTGAACAACAGTCAGAAGAAAACGCAAGTACTAAGAACTTGACAGGCCTTTCCAGTGGGACTGAGAAG
AAACCTCATTACATGGAAGTGCTAGAAATGCGAGCCAAAAACCCAGTGCCCCAGCTGCGTAAATTTAAAA
CCAATGTGTTACCTTTTCGACAAAATGATTCATCTAGTCATTGCCAGAAGAGTGGGTCTCCTATTTCCTC
AGAAGAGCGGCGGCGCAGGGATAAGCAGCATCTTGATGACATCACAGCAGCTCGGCTTCTACCACTTCAC
CATATGCCCACGCAGCTGCTCTCCATAGAAGAATCCTTGGCACTTCAGAAACAGCAGAAACAGAATTATG
AGGAGATGCAAGCAAAGCTCGCAGCGCAAAAATTAGCTGAAAGACTGAATATTAAAATGCGGAGTTATAA
TCCAGAAGGGGAGTCTTCAGGGAGATACCGAGAAGTAAGGGATGAAGATGACGATTGGTCCTCTGATGAA
TTCTGA

Translation (211 aa):
MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNELQRITIADQGEQQSEENASTKNLTGLSSGTEK
KPHYMEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLH
HMPTQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDE
F


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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