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Report for CCDS42135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42135.1 Public Homo sapiens 16 XPO6 24 110 108 CCDS HistoryNCBI Gene:23214Re-query CCDS DB by CCDS ID:42135.1Re-query CCDS DB by GeneID:23214See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42135.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304658.10 ENSP00000302790.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304658.10Link to Ensembl Protein Viewer:ENSP00000302790.4Re-query CCDS DB by Nucleotide ID:ENST00000304658Re-query CCDS DB by Protein ID:ENSP00000302790
Original member Current member NCBI NM_015171.4 NP_055986.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015171.4Link to Protein Sequence:NP_055986.1Re-query CCDS DB by Nucleotide ID:NM_015171Re-query CCDS DB by Protein ID:NP_055986Link to BLAST:NP_055986.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055986.1 1125 Q96QU8-1 1125 100% 0 0

Chromosomal Locations for CCDS 42135.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28098538 28098639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28101458 28101688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28101847 28101945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28104546 28104707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28106043 28106214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28106383 28106497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28107522 28107677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28111817 28112006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28112904 28113050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28117318 28117462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28121670 28121762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28125689 28125848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28132334 28132403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28133841 28133933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28135216 28135324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28146094 28146203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28152659 28152785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28156074 28156527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28166508 28166585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28169750 28169909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28175898 28176095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28177220 28177332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28180941 28181031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28211366 28211368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3378 nt):
ATGGCATCTGAAGAAGCCTCTCTCAGGGCATTGGAAAGTCTGATGACAGAATTTTTTCACGATTGTACAA
CCAATGAAAGAAAACGTGAGATAGAGGAGCTTCTTAATAACTTTGCCCAGCAAATAGGAGCCTGGAGATT
CTGCCTGTACTTTCTCTCCAGCACTAGGAATGACTATGTAATGATGTACAGTTTAACAGTTTTTGAGAAT
CTGATCAATAAAATGTGGCTTGGGGTCCCATCTCAGGATAAGATGGAAATCCGTAGCTGTCTGCCCAAAC
TCCTTTTGGCTCACCATAAAACCTTACCTTACTTTATCCGGAACAAGCTCTGCAAAGTTATTGTTGATAT
TGGACGTCAGGATTGGCCCATGTTCTACCACGACTTTTTTACTAACATTTTACAGTTGATCCAGTCCCCT
GTGACAACCCCCCTTGGGCTGATCATGTTGAAGACAACTTCAGAAGAGCTGGCTTGTCCCCGTGAGGACC
TCAGTGTGGCTCGGAAGGAGGAGTTGCGGAAGCTGCTACTGGACCAGGTGCAGACAGTGCTTGGGCTACT
GACAGGTATCTTGGAGACTGTCTGGGACAAACACAGTGTTACTGCTGCCACTCCACCACCATCCCCGACC
TCAGGAGAAAGTGGTGACTTACTGAGTAACCTGTTGCAGAGTCCCAGTTCAGCCAAACTGTTGAATCAGC
CAATTCCCATCCTTGATGTGGAGAGTGAGTATATCTGTTCCCTGGCTTTGGAGTGCCTGGCCCATCTCTT
CAGTTGGATTCCTCTGTCTGCCAGCATCACCCCATCCCTCCTTACCACCATCTTCCACTTTGCACGATTT
GGCTGTGACATCCGGGCCAGAAAGATGGCGTCAGTTAACGGCAGCAGCCAGAACTGTGTCTCGGGTCAGG
AGCGCGGCCGGCTGGGGGTCCTGGCCATGTCCTGCATCAATGAACTCATGTCCAAGAACTGTGTGCCTAT
GGAATTTGAGGAGTATTTACTGCGTATGTTCCAGCAGACTTTCTACCTCCTGCAGAAAATCACCAAGGAT
AACAATGCCCACACAGTGAAGAGCAGGCTAGAAGAGCTCGATGAGAGCTATATCGAGAAGTTTACTGACT
TTCTTCGGCTCTTTGTGAGTGTTCACCTAAGAAGAATCGAGTCTTACTCCCAGTTCCCTGTGGTGGAGTT
TTTGACACTTTTGTTCAAGTACACATTTCATCAGCCTACTCATGAAGGTTACTTCTCTTGTTTGGATATC
TGGACGCTGTTTTTGGACTATCTGACAAGTAAAATTAAAAGTCGTCTTGGAGACAAGGAAGCAGTTCTCA
ACAGGTACGAAGATGCCCTGGTGCTCCTGCTCACAGAGGTGTTGAATCGAATCCAGTTCAGATACAACCA
AGCCCAGCTGGAGGAGTTGGATGATGAGACTCTGGATGACGATCAGCAGACGGAGTGGCAGCGGTACTTA
CGGCAGAGCTTGGAGGTGGTGGCCAAAGTGATGGAGCTCCTGCCCACGCACGCCTTCTCCACACTGTTCC
CTGTTCTTCAGGACAATTTAGAAGTTTATTTGGGATTACAACAGTTTATAGTCACTTCAGGGTCAGGACA
CAGGTTGAACATCACGGCGGAGAACGACTGCCGGCGGCTGCACTGCTCCCTGAGAGACTTGAGCTCCCTG
CTGCAGGCCGTGGGCCGCCTGGCCGAGTACTTTATCGGGGATGTGTTTGCTGCACGGTTCAATGATGCCC
TCACAGTCGTGGAAAGGTTGGTCAAAGTCACTCTGTACGGATCTCAGATAAAATTGTACAACATTGAAAC
TGCTGTGCCATCAGTATTGAAACCTGACCTCATTGATGTGCATGCTCAGTCCCTGGCTGCGCTGCAGGCT
TACTCTCACTGGTTAGCACAGTATTGCAGTGAAGTTCACCGGCAGAACACGCAGCAGTTCGTGACACTCA
TCTCTACTACCATGGATGCAATCACACCTCTAATCAGCACCAAGGTCCAAGACAAGCTGCTGCTATCTGC
GTGCCACTTACTGGTCTCACTGGCCACCACCGTGCGGCCCGTCTTTCTGATCAGCATCCCTGCAGTGCAG
AAAGTATTCAACAGAATCACTGATGCCTCTGCCCTGCGACTTGTCGATAAGGCCCAGGTGTTGGTGTGCC
GAGCCCTCTCTAACATCTTGCTGCTTCCGTGGCCAAACCTTCCAGAGAATGAGCAGCAGTGGCCCGTGCG
CTCCATCAACCACGCCAGCCTCATCTCTGCACTCTCCCGGGACTATCGCAACCTGAAGCCCAGTGCTGTT
GCCCCACAGAGAAAGATGCCACTGGATGACACCAAACTGATTATCCACCAGACACTCAGCGTCTTAGAAG
ATATTGTGGAGAATATCTCGGGGGAGTCCACCAAGTCTCGACAGATTTGCTACCAGTCGCTGCAGGAATC
TGTTCAGGTCTCCCTGGCCCTCTTTCCAGCTTTTATCCATCAGTCAGATGTGACTGATGAGATGCTGAGC
TTCTTCCTCACTCTGTTTCGAGGCCTTAGAGTACAGATGGGTGTGCCTTTCACTGAGCAAATCATACAGA
CTTTCCTCAACATGTTTACCAGAGAGCAGTTAGCCGAGAGCATCCTCCACGAGGGCAGCACAGGCTGCCG
GGTGGTGGAGAAGTTTCTGAAGATCCTGCAGGTGGTGGTCCAGGAGCCAGGCCAGGTGTTCAAGCCCTTC
CTCCCCAGCATCATCGCCCTGTGCATGGAGCAAGTGTATCCCATCATTGCCGAGCGTCCCTCCCCTGATG
TGAAGGCCGAGCTGTTTGAGCTCCTTTTCCGGACGCTCCATCACAACTGGAGGTACTTCTTCAAGTCCAC
CGTGCTGGCCAGTGTCCAGAGGGGGATCGCTGAGGAGCAGATGGAGAATGAGCCCCAGTTCAGTGCCATC
ATGCAGGCTTTCGGACAGTCCTTTCTCCAGCCCGACATCCACCTTTTTAAACAAAATCTCTTCTACTTGG
AGACTCTCAACACCAAGCAGAAGCTGTACCACAAGAAGATCTTCCGGACTGCCATGCTGTTCCAGTTTGT
GAACGTGCTGCTCCAGGTCCTGGTCCACAAGTCCCATGATCTTCTGCAGGAGGAGATTGGCATCGCCATC
TACAACATGGCCTCAGTCGACTTTGATGGCTTCTTTGCCGCCTTCCTCCCAGAGTTCCTGACCAGCTGTG
ATGGTGTGGATGCCAACCAGAAAAGTGTGCTGGGGCGGAATTTCAAGATGGATCGGGACCTGCCCTCATT
CACCCAGAATGTGCACAGGCTGGTCAACGACCTGCGCTACTACAGACTCTGCAACGACAGCCTGCCCCCT
GGCACTGTGAAGCTCTAG

Translation (1125 aa):
MASEEASLRALESLMTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYVMMYSLTVFEN
LINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLPYFIRNKLCKVIVDIGRQDWPMFYHDFFTNILQLIQSP
VTTPLGLIMLKTTSEELACPREDLSVARKEELRKLLLDQVQTVLGLLTGILETVWDKHSVTAATPPPSPT
SGESGDLLSNLLQSPSSAKLLNQPIPILDVESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARF
GCDIRARKMASVNGSSQNCVSGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYLLQKITKD
NNAHTVKSRLEELDESYIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLDI
WTLFLDYLTSKIKSRLGDKEAVLNRYEDALVLLLTEVLNRIQFRYNQAQLEELDDETLDDDQQTEWQRYL
RQSLEVVAKVMELLPTHAFSTLFPVLQDNLEVYLGLQQFIVTSGSGHRLNITAENDCRRLHCSLRDLSSL
LQAVGRLAEYFIGDVFAARFNDALTVVERLVKVTLYGSQIKLYNIETAVPSVLKPDLIDVHAQSLAALQA
YSHWLAQYCSEVHRQNTQQFVTLISTTMDAITPLISTKVQDKLLLSACHLLVSLATTVRPVFLISIPAVQ
KVFNRITDASALRLVDKAQVLVCRALSNILLLPWPNLPENEQQWPVRSINHASLISALSRDYRNLKPSAV
APQRKMPLDDTKLIIHQTLSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAFIHQSDVTDEMLS
FFLTLFRGLRVQMGVPFTEQIIQTFLNMFTREQLAESILHEGSTGCRVVEKFLKILQVVVQEPGQVFKPF
LPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYFFKSTVLASVQRGIAEEQMENEPQFSAI
MQAFGQSFLQPDIHLFKQNLFYLETLNTKQKLYHKKIFRTAMLFQFVNVLLQVLVHKSHDLLQEEIGIAI
YNMASVDFDGFFAAFLPEFLTSCDGVDANQKSVLGRNFKMDRDLPSFTQNVHRLVNDLRYYRLCNDSLPP
GTVKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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