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Report for CCDS42175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42175.1 Public Homo sapiens 16 HSF4 24 110 108 CCDS HistoryNCBI Gene:3299Re-query CCDS DB by CCDS ID:42175.1Re-query CCDS DB by GeneID:3299See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42175.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000521374.6 ENSP00000430947.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000521374.6Link to Ensembl Protein Viewer:ENSP00000430947.2Re-query CCDS DB by Nucleotide ID:ENST00000521374Re-query CCDS DB by Protein ID:ENSP00000430947
Original member Current member NCBI NM_001040667.3 NP_001035757.1 Accepted alive Link to Nucleotide Sequence:NM_001040667.3Link to Protein Sequence:NP_001035757.1Re-query CCDS DB by Nucleotide ID:NM_001040667Re-query CCDS DB by Protein ID:NP_001035757Link to BLAST:NP_001035757.1
Original member Current member NCBI NM_001374675.1 NP_001361604.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001374675.1Link to Protein Sequence:NP_001361604.1Re-query CCDS DB by Nucleotide ID:NM_001374675Re-query CCDS DB by Protein ID:NP_001361604Link to BLAST:NP_001361604.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035757.1 492 Q9ULV5-1 492 100% 0 0
NP_001361604.1 492 Q9ULV5-1 492 100% 0 0

Chromosomal Locations for CCDS 42175.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67164812 67164934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67165522 67165630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67165719 67165846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67165946 67166070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67166320 67166395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67166558 67166622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67167120 67167222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67167475 67167599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67167720 67167947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67168831 67168936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67169036 67169101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67169279 67169348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67169631 67169785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGCAGGAAGCGCCAGCTGCGCTGCCCACGGAGCCAGGCCCCAGCCCCGTGCCTGCCTTCCTCGGCAAGC
TATGGGCGCTGGTGGGGGACCCAGGCACAGACCACCTGATCCGCTGGAGCCCGAGCGGGACCAGTTTCCT
CGTAAGCGACCAGAGCCGTTTCGCCAAGGAAGTGCTGCCCCAGTATTTCAAGCATAGCAACATGGCGAGC
TTCGTGCGCCAACTCAACATGTACGGTTTTCGGAAGGTGGTGAGCATCGAGCAGGGCGGCCTGCTTAGGC
CGGAGCGCGACCACGTCGAGTTCCAGCACCCGAGCTTCGTGCGCGGCCGCGAGCAGCTACTGGAGCGCGT
GCGGCGCAAGGTGCCCGCGCTGCGCGGCGACGACGGCCGCTGGCGCCCGGAGGACCTGGGTCGACTACTG
GGCGAGGTGCAGGCTTTGCGGGGAGTGCAGGAGAGCACCGAGGCGCGGCTGCGGGAGCTCAGGCAGCAGA
ACGAGATCTTGTGGCGGGAGGTGGTGACACTTCGGCAGAGCCACGGTCAGCAGCACCGGGTCATTGGCAA
GCTGATCCAGTGTCTCTTTGGGCCACTTCAGGCGGGGCCGAGCAATGCAGGAGGCAAGAGAAAGCTGTCC
CTGATGCTGGATGAGGGGAGCTCATGCCCAACACCTGCCAAGTTCAACACCTGCCCTCTACCTGGTGCCC
TTCTGCAGGACCCCTACTTCATCCAGTCGCCTCTCCCAGAGACAAATTTGGGCCTTAGCCCTCACAGGGC
CAGGGGCCCCATCATCTCTGACATCCCAGAAGACTCTCCATCCCCTGAGGGGACCAGGCTTTCTCCCTCC
AGTGATGGCAGGAGGGAGAAGGGCCTGGCACTGCTCAAAGAAGAGCCGGCCAGTCCAGGGGGGGATGGCG
AGGCCGGGCTGGCCCTGGCCCCAAACGAGTGTGACTTCTGCGTGACAGCCCCCCCGCCACTGCCTGTGGC
TGTGGTGCAGGCCATCCTGGAAGGGAAAGGGAGCTTCAGCCCCGAGGGGCCCAGGAATGCCCAACAGCCT
GAACCAGGGGATCCCAGGGAGATACCTGACAGGGGGCCTCTGGGCCTGGAAAGCGGGGACAGGAGCCCAG
AGAGTCTGCTGCCTCCGATGCTGCTTCAGCCCCCTCAAGAAAGTGTGGAACCTGCAGGGCCTCTAGATGT
GCTGGGCCCCAGTCTCCAAGGGCGAGAATGGACCCTGATGGACTTGGACATGGAGCTGTCCTTGATGCAG
CCCTTGGTTCCAGAGCGGGGTGAGCCTGAGCTGGCGGTCAAGGGGTTAAATTCTCCAAGCCCAGGGAAGG
ACCCCACGCTCGGGGCCCCACTCCTGCTGGATGTCCAGGCGGCCTTGGGAGGCCCAGCCCTGGGCCTGCC
TGGGGCTTTAACCATTTATAGCACTCCTGAGAGCCGGACTGCCTCCTACTTGGGCCCGGAAGCCAGTCCC
TCCCCCTAA

Translation (492 aa):
MQEAPAALPTEPGPSPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMAS
FVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPALRGDDGRWRPEDLGRLL
GEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQQHRVIGKLIQCLFGPLQAGPSNAGGKRKLS
LMLDEGSSCPTPAKFNTCPLPGALLQDPYFIQSPLPETNLGLSPHRARGPIISDIPEDSPSPEGTRLSPS
SDGRREKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPRNAQQP
EPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQ
PLVPERGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPALGLPGALTIYSTPESRTASYLGPEASP
SP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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