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Report for CCDS42183.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
42183.1 |
Public |
Homo sapiens |
16 |
ZFP90 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:146198](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:42183.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:146198](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 42183.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000398253.6 |
ENSP00000381304.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000398253.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000381304.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000398253](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000381304](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000563169.7 |
ENSP00000454418.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000563169.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000454418.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000563169](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000454418](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000570495.5 |
ENSP00000460547.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000570495.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000460547.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000570495](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000460547](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001305203.2 |
NP_001292132.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001305203.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001292132.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001305203](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001292132](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001292132.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_133458.4 |
NP_597715.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_133458.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_597715.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_133458](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_597715](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_597715.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 42183.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1911 nt): ATGGCCCCGAGGCCTCCGACCGCCGCGCCCCAGGAATCAGTGACATTCAAAGATGTGTCTGTGGACTTCA CCCAGGAAGAATGGTACCATGTCGACCCTGCTCAGAGGAGCTTATACAGGGATGTGATGCTGGAGAACTA TAGCCACCTGGTTTCTCTTGGATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAA GAGCCATGGATATCAGAGGGAGAAATCCAACGACCTTTCTATCCAGACTGGAAGACCAGGCCTGAAGTCA AATCATCACATTTGCAGCAGGATGTATCAGAAGTATCCCACTGCACACATGATCTCTTACATGCTACATT AGAAGACTCCTGGGATGTTAGCAGCCAGTTAGACAGGCAACAGGAAAACTGGAAGAGACATCTGGGATCA GAGGCATCCACCCAGAAGAAAATAATTACACCACAAGAAAATTTTGAGCAAAATAAATTTGGTGAAAATT CTAGATTGAACACCAATTTGGTTACACAACTGAACATTCCTGCAAGAATAAGGCCTAGTGAATGTGAGAC CCTTGGAAGCAATTTGGGACATAATGCAGACTTACTTAATGAGAATAATATTCTTGCAAAAAAGAAACCC TATAAGTGTGATAAATGTAGAAAAGCCTTTATTCATAGATCATCGCTTACTAAACATGAGAAAACACATA AAGGAGAGGGAGCTTTCCCTAATGGAACAGATCAAGGAATTTATCCTGGAAAGAAACACCATGAATGTAC CGACTGTGGGAAAACCTTTCTCTGGAAGACACAGCTTACTGAGCATCAGAGAATTCACACTGGGGAGAAA CCCTTTGAATGCAATGTATGTGGAAAGGCCTTCAGGCATAGCTCATCTCTTGGTCAGCATGAGAATGCTC ATACCGGAGAGAAACCCTATCAGTGTAGTCTCTGTGGGAAAGCCTTCCAGCGCAGCTCCTCCCTTGTTCA ACACCAGCGAATTCACACTGGAGAGAAACCCTATCGATGTAATCTATGTGGGAGGTCCTTTAGGCATGGC ACATCCCTCACTCAACACGAGGTCACACACAGTGGAGAGAAGCCCTTCCAGTGTAAGGAATGTGGGAAAG CCTTTAGTCGATGTTCTTCCCTTGTCCAACATGAGAGGACTCATACTGGAGAGAAACCTTTTGAATGTAG CATATGTGGGAGGGCTTTTGGTCAGAGCCCATCCCTTTATAAACATATGAGGATTCATAAGAGAGGCAAA CCTTACCAAAGCAGTAACTACAGCATAGATTTCAAGCACAGCACATCTCTCACTCAAGATGAAAGCACTC TTACCGAAGTGAAATCCTACCATTGTAATGACTGTGGGGAAGACTTTAGTCACATTACAGACTTTACTGA CCATCAGAGGATCCATACTGCAGAGAACCCCTATGATTGTGAGCAGGCTTTTAGTCAGCAAGCTATTTCT CATCCTGGAGAGAAACCCTATCAATGTAATGTATGTGGGAAAGCTTTCAAAAGGAGTACAAGTTTCATAG AGCATCACAGAATTCATACTGGAGAGAAACCCTATGAATGTAATGAGTGTGGAGAAGCCTTTAGTCGACG CTCATCGCTTACTCAACATGAGAGAACCCACACTGGAGAGAAACCCTATGAATGTATTGACTGTGGGAAA GCCTTTAGTCAAAGTTCATCTCTCATTCAGCATGAGAGAACTCATACTGGAGAGAAGCCCTATGAATGTA ATGAATGTGGGAGAGCCTTCCGAAAAAAAACCAACCTGCATGATCATCAGAGAATTCATACTGGAGAAAA ACCCTATTCTTGTAAGGAATGTGGGAAAAACTTCAGCCGAAGTTCAGCTCTTACTAAACACCAGAGAATT CATACTCGAAATAAACTCTAG
Translation (636 aa): MAPRPPTAAPQESVTFKDVSVDFTQEEWYHVDPAQRSLYRDVMLENYSHLVSLGYQVSKPEVIFKLEQGE EPWISEGEIQRPFYPDWKTRPEVKSSHLQQDVSEVSHCTHDLLHATLEDSWDVSSQLDRQQENWKRHLGS EASTQKKIITPQENFEQNKFGENSRLNTNLVTQLNIPARIRPSECETLGSNLGHNADLLNENNILAKKKP YKCDKCRKAFIHRSSLTKHEKTHKGEGAFPNGTDQGIYPGKKHHECTDCGKTFLWKTQLTEHQRIHTGEK PFECNVCGKAFRHSSSLGQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNLCGRSFRHG TSLTQHEVTHSGEKPFQCKECGKAFSRCSSLVQHERTHTGEKPFECSICGRAFGQSPSLYKHMRIHKRGK PYQSSNYSIDFKHSTSLTQDESTLTEVKSYHCNDCGEDFSHITDFTDHQRIHTAENPYDCEQAFSQQAIS HPGEKPYQCNVCGKAFKRSTSFIEHHRIHTGEKPYECNECGEAFSRRSSLTQHERTHTGEKPYECIDCGK AFSQSSSLIQHERTHTGEKPYECNECGRAFRKKTNLHDHQRIHTGEKPYSCKECGKNFSRSSALTKHQRI HTRNKL
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