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Report for CCDS4231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4231.1 Public Homo sapiens 5 SLC35A4 24 110 108 CCDS HistoryNCBI Gene:113829Re-query CCDS DB by CCDS ID:4231.1Re-query CCDS DB by GeneID:113829See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4231.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323146.8 ENSP00000327133.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323146.8Link to Ensembl Protein Viewer:ENSP00000327133.3Re-query CCDS DB by Nucleotide ID:ENST00000323146Re-query CCDS DB by Protein ID:ENSP00000327133
Original member Current member EBI ENST00000514199.1 ENSP00000424566.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514199.1Link to Ensembl Protein Viewer:ENSP00000424566.1Re-query CCDS DB by Nucleotide ID:ENST00000514199Re-query CCDS DB by Protein ID:ENSP00000424566
Original member Current member EBI ENST00000612662.2 ENSP00000479255.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612662.2Link to Ensembl Protein Viewer:ENSP00000479255.1Re-query CCDS DB by Nucleotide ID:ENST00000612662Re-query CCDS DB by Protein ID:ENSP00000479255
Original member Current member NCBI NM_080670.4 NP_542401.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080670.4Link to Protein Sequence:NP_542401.1Re-query CCDS DB by Nucleotide ID:NM_080670Re-query CCDS DB by Protein ID:NP_542401Link to BLAST:NP_542401.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542401.1 324 Q96G79-1 324 100% 0 0

Chromosomal Locations for CCDS 4231.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140567170 140568144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGAGTGTAGAGGATGGGGGTATGCCAGGCCTGGGCCGTCCCAGGCAGGCCCGCTGGACCCTGATGCTAC
TCCTATCCACTGCCATGTACGGTGCCCATGCCCCATTGCTGGCACTGTGCCATGTGGACGGCCGAGTGCC
CTTCCGGCCCTCCTCAGCCGTGCTGCTGACTGAGCTGACCAAGCTACTGTTATGCGCCTTCTCCCTTCTG
GTAGGCTGGCAAGCATGGCCCCAGGGGCCCCCACCCTGGCGCCAGGCTGCTCCCTTCGCACTATCAGCCC
TGCTCTATGGCGCTAACAACAACCTGGTGATCTATCTTCAGCGTTACATGGACCCCAGCACCTACCAGGT
GCTGAGTAATCTCAAGATTGGAAGCACAGCTGTGCTCTACTGCCTCTGCCTCCGGCACCGCCTCTCTGTG
CGTCAGGGGTTAGCGCTGCTGCTGCTGATGGCTGCGGGAGCCTGCTATGCAGCAGGGGGCCTTCAAGTTC
CCGGGAACACCCTTCCCAGTCCCCCTCCAGCAGCTGCTGCCAGCCCCATGCCCCTGCATATCACTCCGCT
AGGCCTGCTGCTCCTCATTCTGTACTGCCTCATCTCAGGCTTGTCGTCAGTGTACACAGAGCTGCTCATG
AAGCGACAGCGGCTGCCCCTGGCACTTCAGAACCTCTTCCTCTACACTTTTGGTGTGCTTCTGAATCTAG
GTCTGCATGCTGGCGGCGGCTCTGGCCCAGGCCTCCTGGAAGGTTTCTCAGGATGGGCAGCACTCGTGGT
GCTGAGCCAGGCACTAAATGGACTGCTCATGTCTGCTGTCATGAAGCATGGCAGCAGCATCACACGCCTC
TTTGTGGTGTCCTGCTCGCTGGTGGTCAACGCCGTGCTCTCAGCAGTCCTGCTACGGCTGCAGCTCACAG
CCGCCTTCTTCCTGGCCACATTGCTCATTGGCCTGGCCATGCGCCTGTACTATGGCAGCCGCTAG

Translation (324 aa):
MSVEDGGMPGLGRPRQARWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELTKLLLCAFSLL
VGWQAWPQGPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAVLYCLCLRHRLSV
RQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITPLGLLLLILYCLISGLSSVYTELLM
KRQRLPLALQNLFLYTFGVLLNLGLHAGGGSGPGLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRL
FVVSCSLVVNAVLSAVLLRLQLTAAFFLATLLIGLAMRLYYGSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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