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Report for CCDS42353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42353.1 Public Homo sapiens 17 LRRC37A2 24 110 108 CCDS HistoryNCBI Gene:474170Re-query CCDS DB by CCDS ID:42353.1Re-query CCDS DB by GeneID:474170See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42353.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000576629.6 ENSP00000459551.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000576629.6Link to Ensembl Protein Viewer:ENSP00000459551.1Re-query CCDS DB by Nucleotide ID:ENST00000576629Re-query CCDS DB by Protein ID:ENSP00000459551
Original member Current member NCBI NM_001006607.3 NP_001006608.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001006607.3Link to Protein Sequence:NP_001006608.2Re-query CCDS DB by Nucleotide ID:NM_001006607Re-query CCDS DB by Protein ID:NP_001006608Link to BLAST:NP_001006608.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006608.2 1700 A6NM11 1700 100% 0 0

Chromosomal Locations for CCDS 42353.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46512713 46515321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46517362 46517433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46520212 46520283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46523084 46523155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46523804 46523884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46540176 46540247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46540807 46540881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46546255 46546373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46548312 46549843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46550415 46550519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46553400 46553449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46555152 46555206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46555285 46555424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46555531 46555579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5103 nt):
ATGTCTTCTGCTCAGTGCCCGGCACTAGTGTGTGTCATGTCCCGGCTGCGTTTCTGGGGCCCATGGCCCC
TCCTTATGTGGCAACTATTGTGGCTACTAGTTAAGGAGGCTCAGCCTCTGGAGTGGGTCAAGGACCCGCT
CCAGCTCACCTCTAATCCCCTGGGGCCGCCTGACTCCTGGTCTTCCCACTCCTCCCATTTCCCACGGGAA
TCTCCCCATGCGCCTACTCTCCCAGCAGACCCGTGGGACTTTGATCACCTGGGGCCCTCTGCTTCCTCAG
AGATGCCAGCCCCACCCCAGGAATCGACTGAAAATTTGGTTCCATTCCTGGACACCTGGGATTCAGCTGG
AGAGCAGCCCCTGGAGCCAGAGCAGTTCTTGGCTTCACAGCAGGATTTAAAGGACAAGCTGAGTCCACAG
GAAAGACTCCCTGTTTCGCCCAAGAAGCTGAAGAAAGATCCAGCTCAGCGTTGGAGCCTTGCTGAGATTA
TTGGAATTACACGCCAATTATCCACACCTCAGAGTCAGAAACAGACTTTGCAGAATGAATATTCCAGTAC
AGATACACCGTATCCCGGTAGCCTGCCTCCAGAACTCCGGGTGAAGTCAGATGAGCCTCCAGGGCCCTCT
GAGCAAGTTGGACCTTCTCAATTCCATCTAGAGCCCGAAACTCAAAATCCAGAGACCCTTGAAGACATCC
AGTCCTCTTCACTCCAGCAAGAAGCCCCAGCACAGCTTCCACAGCTCCTTGAGGAAGAACCTTCTTCAAT
GCAGCAGGAGGCCCCAGCTCTGCCTCCAGAGTCCTCTATGGAGAGTCTAACTCTACCGAATCATGAGGTG
TCAGTTCAACCTCCAGGTGAGGATCAAGCTTATTATCACTTGCCCAACATTACAGTTAAACCTGCAGATG
TGGAGGTTACCATAACTTCAGAGCCTACCAATGAGACAGAATCTTCCCAAGCCCAGCAGGAGACCCCAAT
TCAGTTTCCAGAGGAGGTGGAACCTTCTGCAACCCAACAGGAGGCCCCAATTGAGCCTCCAGTTCCTCCT
ATGGAGCATGAACTTTCCATCAGTGAGCAGCAGCAGCCAGTTCAGCCTTCTGAGTCTCCTAGGGAGGTCG
AATCTTCTCCGACCCAGCAGGAGACCCCAGGTCAGCCTCCAGAACATCATGAAGTCACAGTTTCACCTCC
AGGTCACCATCAAACTCATCATTTAGCTTCACCCAGTGTCTCTGTGAAGCCTCCAGACGTGCAGCTCACC
ATAGCAGCAGAGCCTAGTGCAGAGGTGGGAACTTCTCTAGTCCACCAGGAGGCTACAACTCGGCTCTCAG
GGTCAGGTAATGATGTAGAACCTCCCGCCATCCAGCACGGGGGCCCACCTCTGCTTCCAGAGTCATCAGA
AGAAGCTGGACCTTTAGCAGTTCAACAGGAGACTTCATTTCAATCTCCGGAACCTATTAATAATGAGAAC
CCCTCTCCAACCCAGCAGGAGGCTGCAGCTGAGCATCCACAGACCGCTGAGGAGGGTGAGTCTTCCCTAA
CCCATCAGGAGGCCCCAGCTCAGACTCCAGAGTTCCCTAATGTAGTTGTAGCTCAACCTCCAGAGCATTC
ACACCTGACTCAAGCCACAGTTCAACCTTTGGATCTGGGGTTTACCATCACTCCAGAATCCAAGACAGAG
GTTGAACTTTCTCCAACCATGAAGGAGACCCCAACTCAGCCTCCTAAGAAAGTTGTACCCCAACTTCGAG
TATATCAAGGGGTAACAAATCCAACACCAGGTCAGGATCAAGCTCAGCATCCAGTGTCACCCAGCGTTAC
AGTTCAACTTTTGGACCTGGGACTTACCATCACTCCAGAACCTACTACGGAGGTTGGACATTCTACACCC
CCGAAGAGGACTATAGTTTCTCCAAAGCATCCTGAGGTGACACTTCCACATCCAGACCAGGTTCAGACTC
AGCATTCACACCTGACTCGAGCCACAGTTCAACCTTTGGACCTGGGGTTTACCATCACTCCAAAATCCAT
GACAGAGGTTGAACCTTCTACAGCCCTGATGACTACAGCTCCTCCTCCAGGACACCCTGAGGTGACACTT
CCACCTTCAGACAAGGGTCAGGCTCAGCATTCACACCTGACTCAAGCCACCGTTCAACCTCTGGACCTGG
AGCTTACCATAACTACAAAACCTACTACAGAGGTTAAACCATCTCCAACCACGGAGGAGACCTCAACTCA
GCCTCCAGACCTGGGACTTGCCATCATTCCAGAACCCACTACAGAGACTAGACATTCTACAGCCCTGGAG
AAGACTACAGCTCCTCGTCCAGACCGGGTTCAGACTCTGCATCGAAGCCTGACTGAAGTCACAGGTCCAC
CTACTGAACTAGAACCTGCTCAGGATTCACTGGTGCAGTCTGAAAGTTACACCCAAAATAAGGCTTTAAC
TGCACCAGAGGAACACAAGGCCTCCACAAGCACCAACATATGTGAGCTCTGTACCTGCGGAGATGAGATG
TTGTCATGTATTGATCTCAACCCAGAGCAGAGGCTCCGCCAAGTGCCTGTGCCAGAGCCCAACACCCACA
ATGGCACCTTCACCATCTTAAATTTCCAAGGAAACTATATTTCTTACATTGATGGAAATGTATGGAAAGC
ATACAGTTGGACCGAGAAACTAATTCTCAGAGAAAATAACTTGACTGAATTACACAAGGATTCATTTGAA
GGCCTGCTATCCCTCCAGTATTTAGATTTATCCTGCAATAAAATACAGTCTATTGAAAGACATACATTTG
AACCACTACCATTTTTGAAGTTTATAAATCTTAGTTGCAATGTAATTACAGAACTCAGCTTTGGAACATT
TCAGGCCTGGCACGGAATGCAGTTTTTACATAAGTTAATTCTCAATCACAATCCTCTGACAACTGTTGAA
GATCCGTATCTCTTTAAATTGCCAGCATTAAAATATCTAGACATGGGAACAACGCTAGTCCCACTTACAA
CACTTAAGAACATTCTCATGATGACTGTTGAACTGGAAAAACTGATCTTACCTAGCCATATGGCCTGCTG
CCTCTGCCAATTTAAAAACAGCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATTGCAACAGTGCATGT
CTGACAAACACCACACATTGTCCTGAAGAAGCATCGGTAGGGAATCCAGAAGGAGCGTTCATGAAGGTGT
TACAAGCCCGGAAGAACTACACAAGCACTGAGCTGATTGTTGAGCCAGAGGAGCCCTCAGACAGCAGTGG
CATCAACTTGTCAGGCTTTGGGAGTGAGCAGCTAGACACCAATGACGAGAGTGATTTTATCAGTACACTA
AGTTACATCTTGCCTTATTTCTCAGCGGTAAACCTAGATGTGAAATCACTGTTACTACCGTTCATTAAAC
TGCCAACCACAGGAAACAGCCTGGCAAAGATTCAAACTGTAGGCCAAAACCGGCAGAGAGTGAAGAGAGT
CCTCATGGGCCCAAGGAGCATCCAGAAAAGGCACTTCAAAGAGGTAGGAAGGCAGAGCATCAGGAGGGAA
CAGGGTGCCCAGGCATCTGTGGAGAACGCTGCCGAAGAAAAAAGGCTCGGGAGTCCAGCCCCAAGGGAGG
TGGAACAGCCCCACACACAGCAGGGGCCTGAGAAGTTAGCGGGAAACGCCGTCTACACCAAGCCTTCCTT
CACCCAAGAGCATAAGGCAGCAGTCTCTGTGCTGAAACCCTTCTCCAAGGGCGCGCCTTCTACCTCCAGC
CCTGCAAAAGCCCTACCACAGGTGAGAGACAGATGGAAAGACTTAACCCACGCTATTTCCATTTTAGAAA
GTGCAAAGGCTAGAGTTACAAATACGAAGACGTCTAAACCAATCGTACATGCCAGAAAAAAATACCGCTT
TCACAAAACTCGCTCCCACGTGACCCACAGAACACCCAAAGTCAAAAAGAGTCCAAAGGTCAGAAAGAAA
AGTTATCTGAGTAGACTGATGCTCGCAAACAGGCTTCCATTCTCTGCAGCGAAGAGCCTCATAAATTCCC
CTTCACAAGGGGCTTTTTCATCCTTAGGAGACCTGAGTCCTCAAGAAAACCCTTTTCTGGAAGTATCTGC
TCCTTCAGAACATTTTATAGAAAACAATAATACAAAACACACAACTGCAAGAAATGCCTTTGAAGAAAAT
GATTTTATGGAAAACACTAACATGCCAGAAGGAACCATCTCTGAAAACACAAACTACAATCATCCTCATG
AGGCAGATTCCGCTGGGACTGCATTCAACTTAGGGCCAACTGTTAAACAAACTGAGACAAAATGGGAATA
CAACAACGTGGGCACTGACCTGTCCCCCGAGCCCAAAAGCTTCAATTACCCATTGCTCTCGTCCCCAGGT
GATCAGTTTGAAATTCAGCTAACCCAGCAGCTACAGTCCCTTATCCCCAACAACAATGTGAGAAGGCTCA
TTGCTCATGTTATCCGGACCTTGAAGATGGACTGCTCTGGGGCCCATGTGCAAGTGACCTGTGCCAAGCT
CATCTCCAGGACAGGCCACCTGATGAAGCTTCTCAGTGGGCAGCAGGAAGTAAAGGCATCCAAGATAGAA
TGGGATACGGACCAATGGAAGATTGAGAACTACATTAATGAGAGCACAGAAGCCCAGAGTGAACAGAAAG
AGAAGTCGCTTGAGCTCAAAAAAGAAGTTCCAGGATATGGCTATACTGACAAACTCATCTTGGCATTAAT
TGTTACTGGAATACTAACGATTTTGATTATACTTTTCTGCCTCATTGTGATATGTTGTCACCGAAGGTCA
TTACAAGAAGATGAAGAAGGATTCTCAAGGGGCATTTTCAGATTTCTGCCATGGAGGGGATGCTCTTCGC
GAAGGGAGAGTCAGGATGGACTTTCCTCATTTGGACAGCCGCTCTGGTTTAAAGATATGTACAAACCTCT
CAGTGCCACAAGAATAAATAATCATGCATGGAAGCTGCACAAGAAGTCATCTAATGAGGACAAGATCCTC
AACAGGGACCCTGGGGACAGCGAAGCCCCAACGGAGGAGGAGGAGAGTGAAGCCCTGCCATAG

Translation (1700 aa):
MSSAQCPALVCVMSRLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPDSWSSHSSHFPRE
SPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGEQPLEPEQFLASQQDLKDKLSPQ
ERLPVSPKKLKKDPAQRWSLAEIIGITRQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPS
EQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEV
SVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPP
MEHELSISEQQQPVQPSESPREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLT
IAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNEN
PSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESKTE
VELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTP
PKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTL
PPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQPPDLGLAIIPEPTTETRHSTALE
KTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEM
LSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFE
GLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVE
DPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLILPSHMACCLCQFKNSIEAVCKTVKLHCNSAC
LTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIVEPEEPSDSSGINLSGFGSEQLDTNDESDFISTL
SYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGQNRQRVKRVLMGPRSIQKRHFKEVGRQSIRRE
QGAQASVENAAEEKRLGSPAPREVEQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSS
PAKALPQVRDRWKDLTHAISILESAKARVTNTKTSKPIVHARKKYRFHKTRSHVTHRTPKVKKSPKVRKK
SYLSRLMLANRLPFSAAKSLINSPSQGAFSSLGDLSPQENPFLEVSAPSEHFIENNNTKHTTARNAFEEN
DFMENTNMPEGTISENTNYNHPHEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPG
DQFEIQLTQQLQSLIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLISRTGHLMKLLSGQQEVKASKIE
WDTDQWKIENYINESTEAQSEQKEKSLELKKEVPGYGYTDKLILALIVTGILTILIILFCLIVICCHRRS
LQEDEEGFSRGIFRFLPWRGCSSRRESQDGLSSFGQPLWFKDMYKPLSATRINNHAWKLHKKSSNEDKIL
NRDPGDSEAPTEEEESEALP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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