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Report for CCDS4249.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
4249.1 |
Public |
Homo sapiens |
5 |
PCDHB7 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:56129](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:4249.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:56129](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 4249.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000231137.6 |
ENSP00000231137.3 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000231137.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000231137.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000231137](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000231137](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_018940.4 |
NP_061763.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_018940.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_061763.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_018940](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_061763](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_061763.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_061763.1 |
793 |
Q9Y5E2 |
793 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 4249.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2382 nt): ATGGAGGCCAGAGTGGAGCGTGCTGTGCAGAAAAGGCAAGTCTTATTTCTTTGTGTATTTCTGGGAATGT CTTGGGCTGGCGCCGAACCGCTTCGGTATTTTGTGGCGGAGGAAACCGAGAGAGGCACCTTTCTTACCAA CTTGGCAAAAGACCTAGGGTTAGGGGTAGGGGAACTGAGAGCCCGGGGAACTAGAATTGTTTCAGACCAG AACATGCAAATTTTACTGCTCAGTTCGCTTACTGGTGATCTACTTCTAAATGAGAAATTGGACCGAGAGG AACTGTGTGGCCCCAGAGAGCCCTGTGTGCTGCCTTTCCAGTTGTTATTGGAAAAACCTTTTCAGATTTT CCGTGCTGAACTATGGGTCAGAGACATCAATGATCACGCTCCAGTATTTCTAGACAGAGAGATTTCCTTG AAAATATTAGAAAGTACCACTCCAGGGGCGGCATTTCTCCTAGAGAGTGCACAGGATTCAGATGTTGGAA CCAACAGCCTGAGTAACTACACCATCAGCCCCAATGCCTATTTCCATATTAATGTCCATGATAGCGGGGA GGGGAATATCTATCCCGAATTGGTGCTGAATCAAGTGCTGGATCGGGAAGAGATACCAGAGTTCAGTTTA ACCCTCACCGCTTTAGACGGCGGCTCTCCTCCAAGATCAGGGACCGCCCTCGTGCGCATTCTGGTTCTAG ACGTAAATGACAACGCCCCTGATTTTGTGCGGTCGCTCTACAAGGTGCAGGTGCCCGAAAATAGCCCCGT TGGTTCCATGGTTGTCTCCGTGTCAGCCAGAGATTTAGATACCGGAAGTAATGGGGAAATAGCCTATGCA TTTTCTTACGCCACTGAAAGAATTCTCAAAACGTTTCAAATCAATCCAACATCTGGCAGTCTTCATCTTA AAGCGCAATTGGACTATGAGGCAATTCAAACTTACACATTAACTATTCAGGCCAAAGACGGCGGCGGGCT TTCTGGAAAATGCACTGTAGTGGTTGATGTAACAGATATAAACGATAATCGACCCGAGCTGCTCCTGTCT TCACTTACTAGCCCAATTGCAGAAAACTCACCCGAGACAGTCGTGGCTGTTTTTAGGATTAGAGACAGAG ATTCCGGGAACAATGGAAAGACAGTGTGCTCCATCCAGGACGATGTCCCCTTCATCCTGAAGCCATCTGT CGAAAACTTCTATACTCTGGTAACAGAGAAACCTTTGGATCGAGAGAGGAACACTGAGTACAACATCACC ATCACCGTCACCGACTTGGGGACACCCAGGCTGAAAACCGAGCACAACATAACCGTGCTGGTCTCCGACG TCAATGACAACGCTCCCGCCTTCACCCAAACCTCCTACACCCTGTTTGTCCGTGAGAACAACAGCCCCGC CCTGCCCATCGGCAGTGTCAGCGCCACAGACAGAGACTCGGGCACCAACGCCCAGGTCATCTACTCCCTG CTGCCGTCCCAGGACCCGCACCTGCCCCTCGCCTCCCTGGTCTCCATCAACGCGGACAACGGCCACCTGT TTGCCCTCAGGTCCCTGGACTACGAGGCCCTGCAGGCGTTCGAGTTCCGCGTGGGCGCCACAGACCGCGG CTCCCCCGCGCTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC GTGCTGTACCCGCTGCAGAACAGCTCCGCGCCCTGCACCGAGCCGTTGCCCCGGGCGGCCGAGCCGGGCT ACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTGCT CAAGGCCACGGAGCCCGGGCTATTCGGCGTGTGGGCGCACAATGGCGAGGTGCGTACCGCCAGGCTGCTG AGCGAGCGCGACGCAGCCAAGCAGAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGG CCACCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCGGCTCCCGGAGGCGGC CCCGGACCAGGCCAACTCGCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCTTCGCTCTTCCTC CTCTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCCCGGTGGGTCGCTGCT CGGTGCCTGAGGGCCCCTTTCCACGACATCTGGTGGACTTGAGCGGCACCGGGACCCTATCCCAGAGCTA CCAGTATGAGGTGTGCCTGACTGGAGGCTCCGGGACAAATGAGTTCAAGTTTCTGAAACCAATTATCCCC AACCTGCTACCCCAGAGCACAGGCAGGGAAGTGGAAGAAAATCGCCCATTTCAGAATAATTTGGGTTTCT GA
Translation (793 aa): MEARVERAVQKRQVLFLCVFLGMSWAGAEPLRYFVAEETERGTFLTNLAKDLGLGVGELRARGTRIVSDQ NMQILLLSSLTGDLLLNEKLDREELCGPREPCVLPFQLLLEKPFQIFRAELWVRDINDHAPVFLDREISL KILESTTPGAAFLLESAQDSDVGTNSLSNYTISPNAYFHINVHDSGEGNIYPELVLNQVLDREEIPEFSL TLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQVPENSPVGSMVVSVSARDLDTGSNGEIAYA FSYATERILKTFQINPTSGSLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLS SLTSPIAENSPETVVAVFRIRDRDSGNNGKTVCSIQDDVPFILKPSVENFYTLVTEKPLDRERNTEYNIT ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALPIGSVSATDRDSGTNAQVIYSL LPSQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPF VLYPLQNSSAPCTEPLPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL SERDAAKQRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLRLPEAAPDQANSLTVYLVVALASVSSLFL LSVLLFVAVRLCRRSRAAPVGRCSVPEGPFPRHLVDLSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIP NLLPQSTGREVEENRPFQNNLGF
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