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Report for CCDS42531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42531.1 Public Homo sapiens 19 ZNF506 24 110 108 CCDS HistoryNCBI Gene:440515Re-query CCDS DB by CCDS ID:42531.1Re-query CCDS DB by GeneID:440515See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42531.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000443905.6 ENSP00000393835.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443905.6Link to Ensembl Protein Viewer:ENSP00000393835.2Re-query CCDS DB by Nucleotide ID:ENST00000443905Re-query CCDS DB by Protein ID:ENSP00000393835
Original member Current member EBI ENST00000540806.7 ENSP00000440625.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000540806.7Link to Ensembl Protein Viewer:ENSP00000440625.1Re-query CCDS DB by Nucleotide ID:ENST00000540806Re-query CCDS DB by Protein ID:ENSP00000440625
Original member Current member EBI ENST00000591639.5 ENSP00000468150.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591639.5Link to Ensembl Protein Viewer:ENSP00000468150.1Re-query CCDS DB by Nucleotide ID:ENST00000591639Re-query CCDS DB by Protein ID:ENSP00000468150
Original member Current member NCBI NM_001099269.3 NP_001092739.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099269.3Link to Protein Sequence:NP_001092739.1Re-query CCDS DB by Nucleotide ID:NM_001099269Re-query CCDS DB by Protein ID:NP_001092739Link to BLAST:NP_001092739.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092739.1 444 Q5JVG8-1 444 100% 0 0

Chromosomal Locations for CCDS 42531.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19794552 19795660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19806031 19806126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19806942 19807068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19821601 19821603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGGGACCATTGCAATTTAGAGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCATTGCCTGGACGCTG
CACAGCGGAATCTATATAGGGATGTGATGTTAGAGAACTACAGAAACCTGATCTTCCTTGGTATTGTTGT
CTCTAAACCAAACCTGATCACCTGTCTGGAGCAAGGAAAAAAACCTTTAACTATGAAGAGGCATGAGATG
ATTGCCAAACCCCCAGTTATGTATTCTCATTTTGCCCAAGACCTTTGGTCAGAGCAGAGCATAAAAGATT
CTTTCCAAAAAGTGATACTAAGAAGATATGAAAAATGTAGACATGACAATTTACAGTTAAAAAAAGGCTG
TGAAAGTGTAGATGAGTGTCCAGTGCACAAAAGAGGTTATAATGGACTTAAACAATGTTTGGCAACTACC
CAGAGAAAAATATTTCAATGTGATGAATATGTGAAATTCTTGCATAAATTTTCAAATTCAAACAAACATA
AGATAAGAGATACTGGAAAAAAATCTTTTAAATGTATAGAATATGGGAAAACTTTTAACCAGTCTTCAAC
CCGTACTACATATAAGAAAATTGATGCTGGAGAGAAACGCTATAAATGTGAAGAATGTGGTAAAGCCTAT
AAGCAGTCCTCACACCTTACTACACATAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAAT
GTGGCAAAGCCTATAAGCAGTCCTGTAACCTTACTACACATAAGATAATTCATACTGGAGAGAAACCCTA
CAGATGTAGAGAATGTGGCAAAGCTTTTAACCACCCTGCAACCCTTTTTTCACATAAGAAAATTCATACT
GGAGAGAAACCATACAAGTGTGATAAATGTGGCAAAGCCTTTATTTCATCCTCAACCCTTACTAAACATG
AGATAATTCATACTGGAGAGAAACCCTACAAATGTGAGGAATGTGGCAAAGCTTTTAACCGTTCCTCAAA
CCTTACTAAACATAAGAGAATTCATACTGGAGATGTACCCTACAAATGTGACGAATGTGGCAAAACCTTT
ACCTGGTACTCAAGCCTCTCTAAACATAAGAGAGCTCATACTGGAGAGAAACCCTACAAGTGTGAAGAAT
GTGGCAAAGCCTTTACTGCATTCTCAACTCTAACTGAACATAAGATAATTCATACTGGAGAGAAACCGTA
CAAATGTGAAGAATGTGGCAAAGCTTTTAACTGGTCCTCAGCCCTTAATAAACATAAGAAAATTCATATT
AGACAGAAACCCTGCATAGTGAAGAATGTGGAAAATCTTTTAAATGTTCCTCAACCCTTAATAAGCATAA
GATAA

Translation (444 aa):
MGPLQFRDVAIEFSLEEWHCLDAAQRNLYRDVMLENYRNLIFLGIVVSKPNLITCLEQGKKPLTMKRHEM
IAKPPVMYSHFAQDLWSEQSIKDSFQKVILRRYEKCRHDNLQLKKGCESVDECPVHKRGYNGLKQCLATT
QRKIFQCDEYVKFLHKFSNSNKHKIRDTGKKSFKCIEYGKTFNQSSTRTTYKKIDAGEKRYKCEECGKAY
KQSSHLTTHKKIHTGEKPYKCEECGKAYKQSCNLTTHKIIHTGEKPYRCRECGKAFNHPATLFSHKKIHT
GEKPYKCDKCGKAFISSSTLTKHEIIHTGEKPYKCEECGKAFNRSSNLTKHKRIHTGDVPYKCDECGKTF
TWYSSLSKHKRAHTGEKPYKCEECGKAFTAFSTLTEHKIIHTGEKPYKCEECGKAFNWSSALNKHKKIHI
RQKPCIVKNVENLLNVPQPLISIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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