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Report for CCDS42604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42604.1 Public Homo sapiens 19 SIGLEC14 24 110 108 CCDS HistoryNCBI Gene:100049587Re-query CCDS DB by CCDS ID:42604.1Re-query CCDS DB by GeneID:100049587See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42604.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360844.7 ENSP00000354090.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360844.7Link to Ensembl Protein Viewer:ENSP00000354090.5Re-query CCDS DB by Nucleotide ID:ENST00000360844Re-query CCDS DB by Protein ID:ENSP00000354090
Original member Current member NCBI NM_001098612.3 NP_001092082.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098612.3Link to Protein Sequence:NP_001092082.1Re-query CCDS DB by Nucleotide ID:NM_001098612Re-query CCDS DB by Protein ID:NP_001092082Link to BLAST:NP_001092082.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092082.1 396 Q08ET2 396 100% 0 0

Chromosomal Locations for CCDS 42604.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 51643355 51643397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51643537 51643672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51643779 51644036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51645477 51645530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51645782 51646060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51646257 51646640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51646723 51646759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGCTGCCCCTGCTGCTGCTGCCCCTGCTGTGGGGGGGGTCCCTGCAGGAGAAGCCAGTGTACGAGCTGC
AAGTGCAGAAGTCGGTGACGGTGCAGGAGGGCCTGTGCGTCCTTGTGCCCTGCTCCTTCTCTTACCCCTG
GAGATCCTGGTATTCCTCTCCCCCACTCTACGTCTACTGGTTCCGGGACGGGGAGATCCCATACTACGCT
GAGGTTGTGGCCACAAACAACCCAGACAGAAGAGTGAAGCCAGAGACCCAGGGCCGATTCCGCCTCCTTG
GGGATGTCCAGAAGAAGAACTGCTCCCTGAGCATCGGAGATGCCAGAATGGAGGACACGGGAAGCTATTT
CTTCCGCGTGGAGAGAGGAAGGGATGTAAAATATAGCTACCAACAGAATAAGCTGAACTTGGAGGTGACA
GCCCTGATAGAGAAACCCGACATCCACTTTCTGGAGCCTCTGGAGTCCGGCCGCCCCACAAGGCTGAGCT
GCAGCCTTCCAGGATCCTGTGAAGCGGGACCACCTCTCACATTCTCCTGGACGGGGAATGCCCTCAGCCC
CCTGGACCCCGAGACCACCCGCTCCTCGGAGCTCACCCTCACCCCCAGGCCCGAGGACCATGGCACCAAC
CTCACCTGTCAGGTGAAACGCCAAGGAGCTCAGGTGACCACGGAGAGAACTGTCCAGCTCAATGTCTCCT
ATGCTCCACAGAACCTCGCCATCAGCATCTTCTTCAGAAATGGCACAGGCACAGCCCTGCGGATCCTGAG
CAATGGCATGTCGGTGCCCATCCAGGAGGGCCAGTCCCTGTTCCTCGCCTGCACAGTTGACAGCAACCCC
CCTGCCTCACTGAGCTGGTTCCGGGAGGGAAAAGCCCTCAATCCTTCCCAGACCTCAATGTCTGGGACCC
TGGAGCTGCCTAACATAGGAGCTAGAGAGGGAGGGGAATTCACCTGCCGGGTTCAGCATCCGCTGGGCTC
CCAGCACCTGTCCTTCATCCTTTCTGTGCAGAGAAGCTCCTCTTCCTGCATATGTGTAACTGAGAAACAG
CAGGGCTCCTGGCCCCTCGTCCTCACCCTGATCAGGGGGGCTCTCATGGGGGCTGGCTTCCTCCTCACCT
ATGGCCTCACCTGGATCTACTATACCAGGTGTGGAGGCCCCCAGCAGAGCAGGGCTGAGAGGCCTGGCTG
A

Translation (396 aa):
MLPLLLLPLLWGGSLQEKPVYELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYA
EVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVT
ALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTN
LTCQVKRQGAQVTTERTVQLNVSYAPQNLAISIFFRNGTGTALRILSNGMSVPIQEGQSLFLACTVDSNP
PASLSWFREGKALNPSQTSMSGTLELPNIGAREGGEFTCRVQHPLGSQHLSFILSVQRSSSSCICVTEKQ
QGSWPLVLTLIRGALMGAGFLLTYGLTWIYYTRCGGPQQSRAERPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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