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Report for CCDS4262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4262.1 Public Homo sapiens 5 PCDHGC4 24 110 108 CCDS HistoryNCBI Gene:56098Re-query CCDS DB by CCDS ID:4262.1Re-query CCDS DB by GeneID:56098See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4262.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306593.2 ENSP00000306918.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306593.2Link to Ensembl Protein Viewer:ENSP00000306918.1Re-query CCDS DB by Nucleotide ID:ENST00000306593Re-query CCDS DB by Protein ID:ENSP00000306918
Original member Current member NCBI NM_018928.3 NP_061751.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018928.3Link to Protein Sequence:NP_061751.1Re-query CCDS DB by Nucleotide ID:NM_018928Re-query CCDS DB by Protein ID:NP_061751Link to BLAST:NP_061751.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061751.1 938 Q9Y5F7-1 938 100% 0 0

Chromosomal Locations for CCDS 4262.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141485174 141487615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2817 nt):
ATGCTCCGCAAGGTGAGAAGCTGGACAGAAATCTGGCGGTGGGCTACCCTTTTGTTCCTCTTTTACCACC
TGGGTTACGTTTGTGGGCAGATCCGCTACCCGGTCCCAGAGGAGTCACAGGAAGGGACTTTTGTAGGGAA
TGTCGCTCAAGATTTCCTGCTGGATACGGACAGTCTGTCAGCTCGCAGGCTGCAGGTCGCTGGAGAGGTG
AACCAAAGACACTTCCGTGTGGATTTGGACAGCGGAGCCCTGCTCATCAAGAACCCAATCGACCGAGAGG
CACTGTGTGGGCTCAGTGCCAGCTGCATCGTGCCCCTGGAGTTTGTCACCGAAGGTCCTTTGGAAATGTA
CCGAGCAGAGGTAGAGATCGTAGATGTGAATGATCACGCCCCCCGTTTTCCGCGGCAGCAGCTGGACTTG
GAAATTGGGGAGGCAGCTCCTCCAGGACAGCGTTTCCCGTTGGAAAAGGCTCAGGATGCAGATGTGGGGA
GCAATTCGATTAGCAGCTATAGGCTGAGCTCCAATGAACACTTTGCACTGGATGTGAAGAAGCGCAGCGA
CGGCAGCCTGGTCCCAGAGCTGCTCCTGGAGAAGCCTTTGGATCGAGAGAAGCAATCGGACTACCGCCTG
GTGCTGACTGCTGTCGATGGAGGGAACCCGCCGAGATCTGGCACCGCAGAGCTCCGGGTATCCGTGCTGG
ACGTAAACGACAACGCCCCAGCCTTCCAGCAATCCAGCTACAGGATTAGTGTGTTGGAGAGCGCACCAGC
GGGCATGGTGCTCATCCAGCTCAATGCCTCAGACCCGGACCTGGGTCCCAGTGGTAACGTCACCTTTTAT
TTCAGTGGTCATACCCCTGATCGTGTAAGAAACCTCTTTAGCCTGCACCCCACTACTGGAAAGCTTACTC
TTTTGGGGCCCCTAGACTTTGAGAGTGAGAATTACTATGAATTTGATGTGCGGGCTCGCGATGGGGGTTC
TCCAGCCATGGAGCAACATTGCAGCCTTCGAGTGGATCTGCTGGACGTAAATGACAATGCCCCTTACATC
ACAGTGACCTCAGAGCTTGGAACCCTCCCCGAGAGTGCAGAACCTGGCACTGTGGTGGCACTTATCAGTG
TGCAGGATCCAGACTCAGGGTCAAACGGAGATGTGAGCCTCCGCATTCCTGACCACTTGCCATTTGCCCT
CAAGTCTGCCTTCAGGAACCAGTTCTCCCTGGTGACTGCTGGACCCTTGGATCGAGAGGCCAAATCTAGC
TATGACATCATGGTCACTGCTTCTGATGCTGGGAACCCTCCTCTCAGTACCCACAGAACTATTTTCCTCA
ATATTTCAGATGTGAATGATAATCCACCCTCTTTCTTTCAGAGGTCACATGAGGTGTTTGTTCCTGAGAA
CAATCGCCCAGGGGACCTGCTTTGCTCCCTTGCAGCCTCTGACCCAGACTCTGGCTTGAATGCGCTTATC
TCCTACTCACTCCTGGAGCCCAGGAATCGAGATGTATCAGCTTCCTCTTTCATCTCTCTGAACCCCCAGA
CAGGAGCTGTTCATGCTACTCGATCCTTTGACTATGAGCAAACCCAGACACTGCAGTTTGAGGTGCAGGC
CCGGGATCGGGGCAACCCACCCCTTAGCAGCACTGTAACAGTTCGTCTATTTGTGCTGGACCTCAATGAC
AATGCTCCAGCTGTGCTCCGTCCTCGGGCCCGGCCTGGTTCCTTATGTCCCCAAGCACTGCCTCCATCAG
TTGGTGCTGGCCACCTAATCACAAAGGTGACTGCTGTGGACTTGGATTCAGGTTACAATGCTTGGGTTTC
CTATCAGCTCCTGGAGGCCCCAGATCCCAGCCTGTTTGCAGTCTCTCGATATGCTGGGGAGGTGCGGACG
GCTGTTCCTATCCCAGCTGACCTCCCACCACAGAAGCTGGTCATTGTGGTAAAGGATAGTGGTAGTCCAC
CACTCTCTACCTCTGTTACTCTCTTAGTGTCCTTAGAGGAAGACACTCATCCAGTTGTCCCAGATCTTCG
AGAATCTTCAGCTCCAAGGGAAGGAGAATCTCGTCTAACCCTCTACTTGGCTGTGTCCCTAGTGGCAATT
TGCTTTGTCTCCTTTGGCTCATTCGTGGCACTACTCTCTAAGTGTCTTCGTGGGGCAGCCTGTGGAGTCA
CATGCTTTCCTGCTGGCACCTGTGCCTGTCTCACCAGATCTCGAAGGAGGGAGGGGCTTCCCCCTTCCAA
TGGGATCCTCCGAATCCAGCTAGGGTCAGATGACCCTATCAAGTTTGTTGATGTGGGAGGCCACTCTCAT
GGCTGTACACCCTTGGCTTCTGCACCCACTCGGAGTGATAGCTTCATGATGGTGAAGTCACCCAGTGCAC
CTATGGCAGGGGAGCCTGTTCGCCCAAGCTGCCCACCCTCTGATCTTCTCTATGGGCTAGAGCAAGCCCC
GCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGAC
ACCGGCACCTGGCCCAACAACCAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTG
AAGCTGCTGATGGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACC
CCAGTTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTG
ACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCA
AGAAGGAGAAGAAGTAA

Translation (938 aa):
MLRKVRSWTEIWRWATLLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEV
NQRHFRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDL
EIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQSDYRL
VLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASDPDLGPSGNVTFY
FSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYI
TVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSS
YDIMVTASDAGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALI
SYSLLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLND
NAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYAGEVRT
AVPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPREGESRLTLYLAVSLVAI
CFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSH
GCTPLASAPTRSDSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDD
TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL
TNAAGKRDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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