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Report for CCDS42720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42720.1 Public Homo sapiens 2 CRACDL 24 110 108 CCDS HistoryNCBI Gene:343990Re-query CCDS DB by CCDS ID:42720.1Re-query CCDS DB by GeneID:343990See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42720.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397899.7 ENSP00000380996.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397899.7Link to Ensembl Protein Viewer:ENSP00000380996.2Re-query CCDS DB by Nucleotide ID:ENST00000397899Re-query CCDS DB by Protein ID:ENSP00000380996
Original member Current member NCBI NM_207362.3 NP_997245.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207362.3Link to Protein Sequence:NP_997245.2Re-query CCDS DB by Nucleotide ID:NM_207362Re-query CCDS DB by Protein ID:NP_997245Link to BLAST:NP_997245.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997245.2 962 Q6NV74 962 100% 0 0

Chromosomal Locations for CCDS 42720.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 98794532 98794671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98796120 98796264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98797350 98797537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98821857 98823537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98826975 98827169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98832348 98832512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98832862 98832997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98838119 98838287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 98846731 98846800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2889 nt):
ATGATTTCCACAAGGGTGATGGACATTAAGCTTCGGGAGGCTGCAGAAGGCCTTGGGGAGGACAGCACAG
GAAAGAAAAAATCTAAATTCAAAACTTTTAAGAAGTTTTTTGGGAAGAAGAAGAGAAAAGAATCGCCGTC
GTCCACAGGAAGTAGCACCTGGAAACAAAGTCAGACGAGGAATGAGGTCATTGCCATCGAATCCGGGCCA
GTGGGCTACGACTCCGAGGATGAGCTGGAGGAGTCGAGGGGCACGCTGGGCAGCCGGGCCCTTTCTCACG
ACAGTATTTTCATTCCTGAGTCCGGACAGGACGCTACTCGGCCTGTGCGGGTGTTTTCCCAAGAAAATGT
GTGTGATCGGATTAAAGCTCTGCAGTTAAAAATACAGTGTAATGTGAAAATGGGGCCACCACCTCCTCCA
GGGGGGCTTCCTGCCAAGCGGGGAGAGGATGCCGGCATGAGCTCTGAGGACGACGGGCTGCCCAGGAGCC
CCCCAGAGATGTCTCTGCTGCACGACGTGGGTCCTGGTACCACCATAAAGGTCTCTGTCGTGTCTCCAGA
CCACGTGAGCGACAGCACCGTCTCTGCCCGGATCTCAGACAACAGCCTGGCACCAGTGGCTGACTTCAGT
TATCCTGCAGAATCCTCCTCCTGCCTGGACAACTCTGCAGCTAAGCACAAGCTCCAGGTCAAGCCCCGCA
ACCAGCGGTCGAGTAAGATGAGGCGGCTCTCATCGCGCGCTCAGTCTGAATCCCTGAGCGACCTGACGTG
CACCCCAGAGGAGGAGGAAAACGAGGAGAAGCCACTTTTGGAAGTCAGCCCAGAAGAGCGCCCCAGCTCT
GGGCAGCAGGACGTGGCGCCAGACAGAGGCCCTGAGCCTGGGCCACCGGCGCCCTTGCCGCCACCCGGAG
GGGCCCGTGCCAGACGCGCCCGCCTGCAGCACTCCTCCGCGCTCACGGCCAGCGTGGAGGAGGGGGGCGT
CCCCGGGGAGGACCCCTCAAGCCGCCCGGCCACCCCGGAGCTCGCCGAGCCCGAGTCGGCCCCCACTCTC
CGCGTGGAGCCCCCGTCCCCGCCGGAGGGCCCCCCGAATCCCGGTCCCGACGGCGGAAAGCAGGATGGGG
AGGCGCCCCCCGCAGGCCCGTGTGCCCCGGCCACGGACAAGGCGGAGGAGGTGGTCTGTGCTCCCGAAGA
CGTCGCGAGCCCGTTTCCCACCGCCATCCCTGAGGGGGACACGACTCCCCCCGAGACTGACCCCGCCGCC
ACCTCAGAGGCGCCCTCTGCTCGCGACGGGCCAGAACGCAGTGTCCCGAAGGAAGCGGAGCCGACGCCGC
CCGTGCTCCCGGATGAGGAGAAGGGGCCCCCAGGGCCGGCGCCTGAGCCCGAGAGAGAAGCGGAGACGGA
GCCCGAGAGAGGAGCGGGGACCGAGCCCGAGAGAATTGGGACCGAGCCCTCCACGGCGCCCGCCCCGAGC
CCGCCGGCGCCCAAGAGCTGCCTGAAACACCGGCCCGCGGCCGCCAGCGAGGGCCCCGCCGCGTCCCCGC
CGCTTGCCGCTGCGGAGTCTCCCCCGGTGGAGCCCGGCCCCGGTTCCCTCGACGCAGAGGCCGCCGCCCC
GGAGCGCCCCAAGGCCGAGCGAGCCGAGGCGCCACCGGCGGGCGCCGAGAGGGCGGCGCCAGAGCGGAAG
GCGGAGAGGGGCGGTGCCGAGCTGCGAGGCGCGAAGAAGTTCTCGGTGTCCTCGTGCCGAGCGCGGCCTC
GTCCGGGCGTCTCCCGCCCGCTGGAACGGGCCAGCGGCCGCCTGCCCCTCGCGAGGAGCGGCCCGGTCTG
GAGGAGCGAGGCGGCTCTTGACGACCTCCAGGGTCTCCCCGAGCCCCAGCACGCGAAACCTGGCCCTCGG
AAGCTGGCGGAGCGCGGCCCTCAGGACTCGGGGGACAGGGCGGCCAGCCCGGCCGGGCCGCGCAAGAGCC
CTCAGGAGGCGGCCGCCGCGCCCGGCACGAGAGAGCCCTGCCCAGCCGCCCAGGAGCCGGCCCCGAGTGA
GGACAGAAACCCCTTCCCCGTCAAGCTCCGGTCCACCTCCCTCTCGCTCAAATACAGGGATGGCGCCTCT
CAGGAGGTGAAGGGTGTGAAGAGGTACAGTGCCGAGGTCCGGTTAGAAAGGTCGCTGACCGTGCTCCCGA
AGGAGGAGAAGTGTCCCCTCGGGACGGCCCCCGCCCTTCGAGGCACCAGGGCCCCCAGCGACCAAGGAAA
GGGGAAGGCCCGGCCCCCCGAGCCGCTCAGCTCCAAGCCGCCCCTGCCCCGGAAGCCGCTTCTGCAGAGC
TTCACGCTCCCGCACCAGCCCGCGCCCCCCGACGCCGGCCCGGGAGAGCGGGAACCCAGGAAGGAGCCCA
GGACGGCGGAGAAAAGGCCGCTGCGCAGGGGAGCTGAAAAGAGTCTGCCGCCTGCAGCAACAGGGCCTGG
AGCTGATGGGCAGCCTGCGCCACCCTGGATCACCGTCACTCGGCAGAAGCGGAGGGGGACCTTGGACCAG
CCACCCAACCAGGAAGACAAGCCTGGGGCACGGACCCTGAAGTCTGAACCAGGAAAGCAAGCCAAGGTGC
CCGAGAGAGGCCAGGAGCCTGTGAAGCAAGCTGACTTTGTTCGCAGCAAGTCTTTCCTGATAACCCCTGT
GAAGCCCGCTGTGGACCGGAAGCAGGGGGCAAAGCTCAACTTCAAGGAGGGGCTGCAAAGAGGAATCTCA
TTGTCCCATCAGAACTTGGCTCAGTCTGCAGTGATGATGGAGAAGGAACTGCATCAGCTGAAGAGAGCCA
GTTATGCCAGTACAGATCAGCCATCCTGGATGGAACTTGCCAGAAAGAAATCTCAAGCTTGGAGTGACAT
GCCCCAGATTATAAAATAG

Translation (962 aa):
MISTRVMDIKLREAAEGLGEDSTGKKKSKFKTFKKFFGKKKRKESPSSTGSSTWKQSQTRNEVIAIESGP
VGYDSEDELEESRGTLGSRALSHDSIFIPESGQDATRPVRVFSQENVCDRIKALQLKIQCNVKMGPPPPP
GGLPAKRGEDAGMSSEDDGLPRSPPEMSLLHDVGPGTTIKVSVVSPDHVSDSTVSARISDNSLAPVADFS
YPAESSSCLDNSAAKHKLQVKPRNQRSSKMRRLSSRAQSESLSDLTCTPEEEENEEKPLLEVSPEERPSS
GQQDVAPDRGPEPGPPAPLPPPGGARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPESAPTL
RVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPEDVASPFPTAIPEGDTTPPETDPAA
TSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGTEPERIGTEPSTAPAPS
PPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAERAAPERK
AERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARSGPVWRSEAALDDLQGLPEPQHAKPGPR
KLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEDRNPFPVKLRSTSLSLKYRDGAS
QEVKGVKRYSAEVRLERSLTVLPKEEKCPLGTAPALRGTRAPSDQGKGKARPPEPLSSKPPLPRKPLLQS
FTLPHQPAPPDAGPGEREPRKEPRTAEKRPLRRGAEKSLPPAATGPGADGQPAPPWITVTRQKRRGTLDQ
PPNQEDKPGARTLKSEPGKQAKVPERGQEPVKQADFVRSKSFLITPVKPAVDRKQGAKLNFKEGLQRGIS
LSHQNLAQSAVMMEKELHQLKRASYASTDQPSWMELARKKSQAWSDMPQIIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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