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Report for CCDS429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
429.1 Public Homo sapiens 1 UTP11 24 110 108 CCDS HistoryNCBI Gene:51118Re-query CCDS DB by CCDS ID:429.1Re-query CCDS DB by GeneID:51118See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 429.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373014.5 ENSP00000362105.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373014.5Link to Ensembl Protein Viewer:ENSP00000362105.4Re-query CCDS DB by Nucleotide ID:ENST00000373014Re-query CCDS DB by Protein ID:ENSP00000362105
Original member Current member NCBI NM_016037.4 NP_057121.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016037.4Link to Protein Sequence:NP_057121.2Re-query CCDS DB by Nucleotide ID:NM_016037Re-query CCDS DB by Protein ID:NP_057121Link to BLAST:NP_057121.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057121.2 253 Q9Y3A2-1 253 100% 0 0

Chromosomal Locations for CCDS 429.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38012803 38012865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38016359 38016420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38017668 38017770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38018464 38018577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38019059 38019152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38019253 38019383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38022699 38022809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38023545 38023628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGCGGCGGCTTTTCGGAAGGCGGCTAAGTCCCGGCAGCGGGAACACAGAGAGCGAAGCCAGCCTGGCT
TTCGAAAACATCTGGGCCTGCTGGAGAAAAAGAAAGATTACAAACTTCGTGCAGATGACTACCGTAAAAA
ACAAGAATACCTCAAAGCTCTTCGGAAGAAGGCTCTTGAAAAAAATCCAGATGAATTCTACTACAAAATG
ACTCGGGTTAAACTCCAGGATGGAGTACATATTATTAAGGAGACTAAGGAAGAAGTAACCCCAGAACAAC
TAAAGCTGATGAGAACTCAGGACGTCAAATATATAGAAATGAAGAGGGTTGCAGAAGCTAAGAAAATCGA
AAGACTAAAATCAGAGCTCCATCTGCTGGATTTCCAGGGGAAGCAACAGAACAAGCATGTGTTCTTTTTT
GACACCAAAAAGGAAGTTGAACAGTTTGATGTCGCAACTCACCTGCAAACAGCCCCGGAGCTAGTCGACA
GAGTCTTTAATAGGCCCAGGATAGAGACCTTGCAGAAAGAAAAAGTGAAAGGAGTTACCAATCAGACTGG
ACTTAAGCGAATAGCTAAAGAAAGGCAAAAGCAGTATAACTGCCTGACACAGCGGATTGAACGAGAGAAG
AAATTGTTCGTTATTGCTCAGAAAATTCAAACACGCAAAGATCTTATGGATAAAACTCAGAAAGTGAAGG
TGAAGAAAGAAACGGTGAACTCCCCAGCTATTTATAAATTTCAGAGTCGTCGAAAACGTTGA

Translation (253 aa):
MAAAFRKAAKSRQREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKM
TRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFFF
DTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIAKERQKQYNCLTQRIEREK
KLFVIAQKIQTRKDLMDKTQKVKVKKETVNSPAIYKFQSRRKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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