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Report for CCDS43133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43133.1 Public Homo sapiens 3 USF3 24 110 108 CCDS HistoryNCBI Gene:205717Re-query CCDS DB by CCDS ID:43133.1Re-query CCDS DB by GeneID:205717See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43133.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316407.9 ENSP00000320794.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316407.9Link to Ensembl Protein Viewer:ENSP00000320794.4Re-query CCDS DB by Nucleotide ID:ENST00000316407Re-query CCDS DB by Protein ID:ENSP00000320794
Original member Current member EBI ENST00000478658.1 ENSP00000420721.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000478658.1Link to Ensembl Protein Viewer:ENSP00000420721.1Re-query CCDS DB by Nucleotide ID:ENST00000478658Re-query CCDS DB by Protein ID:ENSP00000420721
Original member Current member NCBI NM_001009899.4 NP_001009899.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001009899.4Link to Protein Sequence:NP_001009899.3Re-query CCDS DB by Nucleotide ID:NM_001009899Re-query CCDS DB by Protein ID:NP_001009899Link to BLAST:NP_001009899.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009899.3 2245 Q68DE3 2245 100% 0 0

Chromosomal Locations for CCDS 43133.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 113654944 113661425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113664313 113664409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113670121 113670203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113673348 113673376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113674832 113674878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6738 nt):
ATGCCAGAAATGACAGAGAATGAGACGCCTACAAAAAAGCAGCACAGAAAGAAAAACCGGGAGACACACA
ATGCAGTGGAGAGGCATAGAAAGAAGAAAATTAATGCTGGGATAAACAGAATAGGAGAGCTGATCCCATG
TTCTCCTGCCCTGAAGCAGAGCAAGAATATGATCCTGGACCAAGCCTTTAAATATATAACAGAATTGAAA
AGGCAAAATGATGAACTCCTGCTTAATGGAGGAAACAATGAACAAGCTGAAGAAATAAAAAAGCTACGGA
AACAACTGGAAGAAATCCAAAAAGAAAATGGCCGATATATTGAATTACTGAAAGCTAATGACATATGCTT
ATATGATGACCCGACAATTCACTGGAAAGGAAATCTTAAAAACTCAAAGGTCTCTGTTGTTATTCCTAGT
GACCAGGTTCAAAAAAAAATTATTGTTTATTCCAACGGGAATCAGCCTGGTGGAAACAGCCAGGGAACAG
CTGTTCAGGGGATAACTTTTAATGTTAGTCATAATTTACAAAAGCAGACCGCCAATGTGGTGCCAGTACA
GAGGACTTGCAATCTTGTGACTCCTGTATCTATTTCTGGAGTTTACCCTTCTGAAAACAAGCCATGGCAT
CAGACCACAGTTCCTGCATTGGCTACCAACCAGCCTGTTCCTCTTTGTCTTCCTGCTGCCATTTCTGCTC
AGAGTATTCTCGAGCTTCCCACCTCTGAAAGCGAATCAAATGTGCTTGGTGCCACTAGTGGCTCACTGAT
TGCTGTTTCAATTGAATCTGAGCCTCACCAACATCATTCTTTGCACACATGCCTAAATGATCAAAATTCT
TCTGAAAATAAGAATGGACAAGAGAACCCCAAAGTATTGAAGAAAATGACCCCTTGTGTTACAAACATCC
CCCACAGCTCCTCAGCAACTGCCACTAAAGTGCACCATGGAAACAAGTCCTGCCTGAGCATACAGGACTT
CAGAGGTGATTTTCAAAACACTTTTGTTGTTTCAGTTACCACCACAGTCTGCTCGCAGCCTCCCAGAACT
GCAGGTGATTCTTCTCCAATGAGCATTAGTAAGAGTGCAGACTTGACAAGTACAGCTACAGTGGTGGCAT
CATCTGCCCCTGGAGTAGGGAAGGCCACCATTCCTATAAGCACTCTTTCGGGAAACCCTTTGGACAATGG
TTGGACTCTTTCTTGTTCTTTGCCTTCTTCAAGTGTTAGTACTTCAGATTTGAAAAACATTAATAGCCTT
ACACGAATCTCTTCAGCTGGAAACACACAGACAACGTGGACTACTTTGCAACTGGCAGGAAACACTATTC
AGCCCTTAAGCCAGACACCATCTTCTGCTGTGACTCCAGTATTAAATGAGTCTGGTACTAGCCCCACCAC
AAGCAACCACAGTAGATATGTGGCTACAGACATCAACTTGAATAATTCCTTTCCAGCAGATGGGCAGCCA
GTTGAGCAAGTAGTTGTAACATTGCCTTCTTGTCCATCTTTACCTATGCAGCCACTAATTGCCCAGCCAC
AAGTTAAATCTCAGCCTCCCAAAAATATCCTTCCACTGAATTCAGCAATGCAAGTGATTCAGATGGCTCA
GCCAGTTGGGTCAGCTGTTAATTCAGCTCCAACTAATCAAAATGTTATAATTCTTCAGCCACCTAGCACC
ACCCCATGCCCAACAGTGATGAGGGCAGAAGTTTCCAACCAAACAGTAGGTCAACAGATAGTAATCATAC
AGGCTGCTAATCAGAATCCTTTGCCACTCCTCCCTGCTCCACCTCCTGGTTCTGTTCGACTCCCCATCAA
TGGAGCCAATACTGTAATAGGGTCTAATAATTCAGTGCAAAATGTTCCAACACCACAGACTTTTGGAGGA
AAGCATCTTGTCCACATATTACCAAGACCTTCATCTTTATCAGCGTCTAACTCAACACAAACTTTTTCTG
TTACCATGTCAAACCAACAGCCTCAAACCATTTCTTTAAATGGACAGCTCTTTGCTTTGCAGCCTGTGAT
GTCTTCATCAGGAACTACAAATCAAACCCCTATGCAAATTATTCAACCCACCACCAGCGAAGATCCAAAT
ACCAATGTTGCCCTGAATACATTTGGTGCTTTGGCCAGCCTCAATCAAAGCATATCACAGATGGCTGGGC
AAAGCTGTGTACAATTGTCTATTAGCCAGCCTGCCAATTCTCAAACTGCTGCAAATAGTCAAACCACTAC
AGCTAACTGTGTTTCATTAACAACAACTGCAGCACCTCCTGTGACAACAGATAGTTCAGCCACACTAGCT
AGTACTTATAATCTAGTGAGTACTTCCTCAATGAACACTGTTGCTTGTTTGCCTAACATGAAATCTAAAA
GGTTGAATAAGAAGCCAGGTGGCAGGAAACACTTAGCAGCAAACAAGTCAGCGTGTCCCCTGAATTCAGT
CAGAGATGTGAGCAAGTTAGACTGCCCCAACACTGAAGGCTCAGCAGAGCCACCCTGTAATGATGGACTG
CTAGAAAGCTTCCCTGCTGTGTTACCATCTGTCTCTGTGTCTCAGGCAAATAGTGTGAGTGTTTCTGCTT
CACATTCTTTGGGTGTTCTAAGCTCTGAATCATTAATACCTGAGTCTGTATCGAAATCTAAGTCAGCAGA
AAAGTCCAGCCCACCCTCCCAAGAATCTGTAACAAGTGAACATTTTGCAATGGCCGCAGCAAAATCCAAA
GATTCTACCCCTAATCTACAACAAGAGACATCTCAGGATAAACCACCAAGTAGTTTAGCATTATCAGATG
CTGCCAAACCCTGCGCTTCAGCCAATGTATTGATTCCATCTCCAAGTGATCCTCACATTTTGGTTTCTCA
GGTTCCTGGTTTGTCATCTACAACAAGCACTACAAGTACTGACTGTGTTTCTGAGGTAGAAATCATTGCT
GAACCTTGCAGAGTTGAGCAAGATTCATCAGATACAATGCAAACCACAGGTCTCTTAAAGGGGCAAGGTT
TAACTACATTGCTATCTGATCTTGCTAAAAAAAAAAACCCTCAGAAATCATCTCTTTCTGATCAGATGGA
TCATCCTGACTTTTCTTCAGAAAATCCTAAAATAGTTGATTCAAGTGTGAATTTACATCCCAAACAGGAA
CTATTACTGATGAACAATGATGATAGAGATCCTCCACAGCATCATTCCTGCCTCCCTGATCAAGAGGTTA
TTAATGGTTCTTTGATCAACGGTAGACAGGCCGACTCTCCCATGTCAACCAGCTCTGGCAGTAGTCGTAG
TTTCTCAGTTGCATCCATGCTTCCTGAAACAACAAGAGAAGATGTGACCAGCAATGCAACAACTAATACA
TGTGACAGCTGTACCTTTGTAGAGCAAACTGATATAGTAGCTCTTGCAGCAAGAGCTATTTTTGACCAGG
AGAACCTTGAGAAGGGGAGAGTTGGCCTCCAGGCTGATATAAGGGAAGTTGCTTCAAAGCCTTCTGAAGC
ATCATTGTTAGAGGGAGACCCACCCTTCAAATCACAGATACCTAAAGAGAGTGGCACAGGACAGGCAGAA
GCAACACCAAATGAATTTAATTCTCAGGGTTCAATTGAAGCAACTATGGAGAGGCCCCTTGAGAAACCAA
GTTGTTCTCTAGGAATTAAAACATCAAATGCATCTTTACAGGATTCAACTTCTCAGCCACCAAGCATCAC
CAGTTTAAGTGTGAATAATCTTATCCATCAGAGCAGCATCAGCCATCCTCTGGCCAGCTGTGCGGGTTTA
TCCCCAACTTCAGAGCAAACAACTGTGCCTGCAACGGTTAATCTGACCGTTTCATCTAGCTCCTATGGCA
GTCAACCTCCTGGACCATCTCTGATGACTGAATATTCCCAAGAACAGCTAAATACTATGACTAGTACCAT
ACCAAATTCACAGATTCAAGAGCCACTCTTAAAGCCAAGCCATGAAAGCCGTAAGGATTCTGCTAAGCGT
GCTGTCCAAGATGACCTTTTACTGTCTTCAGCTAAACGTCAAAAGCACTGTCAGCCAGCCCCCCTCAGGC
TTGAAAGTATGTCCCTGATGAGCAGAACTCCAGACACCATTTCTGACCAAACTCAAATGATGGTCAGTCA
GATCCCTCCTAATTCTTCAAACTCAGTTGTGCCTGTTAGCAACCCAGCTCATGGAGATGGCCTTACACGA
TTATTTCCACCTAGTAACAACTTTGTGACTCCTGCATTGAGGCAAACTGAAGTTCAGTGTGGTTCTCAGC
CTTCAGTTGCTGAACAGCAGCAAACCCAGGCAAGTCAGCATCTACAGGCCCTGCAGCAGCATGTTCCAGC
TCAAGGTGTATCTCACCTTCATAGTAACCATCTCTACATAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACAGCAACAACAACAAGCAGGGCAGTTAAGAGAGAGGCATCACTTATATCAAATGCAGCATC
ATGTACCTCATGCAGAGAGCTCTGTCCACTCTCAGCCCCATAATGTCCACCAACAGAGGACTCTGCAACA
GGAAGTTCAGATGCAGAAAAAGAGGAATCTTGTTCAGGGCACCCAGACCTCTCAGCTTTCCTTACAACCA
AAGCACCATGGAACTGACCAATCCCGATCCAAGACTGGCCAGCCACATCCCCACCATCAGCAGATGCAGC
AACAAATGCAGCAACACTTTGGAAGCTCCCAGACAGAGAAGAGCTGTGAAAACCCTTCAACTAGTCGGAA
CCATCATAACCATCCCCAGAACCATCTCAATCAAGATATTATGCACCAACAGCAGGATGTTGGAAGCAGA
CAGCAAGGTTCAGGGGTTTCATCTGAACATGTATCTGGCCATAATCCAATGCAGAGGCTTTTGACATCAA
GAGGCTTAGAGCAGCAAATGGTGTCCCAACCAAGTATTGTGACTAGATCTTCAGACATGACCTGTACTCC
ACACAGGCCAGAGAGAAATAGAGTTTCAAGTTATTCTGCTGAGGCACTCATTGGAAAGACATCTTCTAAT
TCAGAGCAGAGAATGGGGATATCAATTCAGGGTTCCAGAGTTTCAGATCAGCTTGAAATGAGAAGCTATC
TTGATGTTCCCAGAAATAAGAGTTTGGCTATTCATAATATGCAGGGTCGTGTGGACCATACTGTGGCCTC
AGATATCCGCCTTTCTGATTGTCAGACGTTTAAACCAAGTGGAGCTAGTCAACAGCCCCAGAGTAATTTT
GAAGTACAATCTTCAAGAAACAATGAAATAGGTAACCCTGTATCATCATTGCGGAGTATGCAGTCCCAGG
CTTTTCGAATTAGTCAAAACACTGGCCCCCCACCAATTGACCGTCAAAAGAGATTATCTTACCCACCAGT
TCAGAGCATCCCAACAGGAAATGGTATTCCATCAAGGGACAGTGAAAATACTTGTCACCAAAGTTTCATG
CAGAGCTTACTTGCCCCTCACCTCAGTGATCAGGTCATTGGGAGCCAGAGGTCACTCTCAGAACATCAGA
GGAATACACAGTGTGGTCCATCCTCTGCAATTGAATATAATTGTCCCCCAACTCATGAAAATGTCCATAT
TAGAAGAGAGAGTGAGAGTCAGAATAGGGAAAGTTGTGACATGTCGTTAGGTGCAATTAACACCAGGAAC
AGCACCTTGAATATTCCTTTTTCAAGTTCCTCTTCCTCAGGAGATATTCAAGGTCGAAACACAAGCCCCA
ATGTTTCTGTACAGAAATCCAATCCCATGAGGATTACTGAGAGTCATGCCACCAAGGGCCACATGAACCC
TCCAGTCACAACCAACATGCATGGGGTTGCAAGGCCAGCGTTGCCACATCCATCTGTGTCTCATGGAAAT
GGCGATCAAGGCCCTGCTGTACGTCAAGCTAATTCTTCAGTTCCCCAGAGATCAAGGCATCCCCTGCAAG
ACAGCAGTGGTTCCAAAATTCGTCAGCCTGAAAGGAATCGTTCTGGAAACCAAAGGCAAAGTACTGTCTT
TGATCCAAGTCTTCCCCATCTTCCTCTCTCTACTGGTGGCAGTATGATTCTTGGACGTCAACAACCTGCC
ACAGAGAAGAGAGGAAGTATTGTTCGTTTCATGCCTGATAGCCCACAAGTACCTAATGATAATTCAGGTC
CTGACCAGCATACACTATCACAAAATTTTGGTTTTTCTTTTATTCCTGAGGGTGGCATGAATCCACCAAT
AAATGCTAATGCTTCTTTCATTCCACAGGTTACTCAGCCTAGTGCCACTCGAACTCCAGCCCTCATCCCG
GTAGATCCGCAAAATACTCTGCCCTCCTTCTATCCTCCATACTCTCCTGCTCATCCTACACTGTCCAATG
ATATTTCAATCCCCTATTTTCCTAATCAGATGTTCTCAAATCCTAGCACAGAGAAGGTAAACAGTGGAAG
TTTAAATAACCGATTTGGATCAATTTTATCTCCTCCCAGACCTGTTGGGTTTGCTCAACCAAGTTTTCCT
CTTCTCCCAGATATGCCACCAATGCACATGACCAACTCTCACTTATCCAATTTTAATATGACATCTTTGT
TTCCAGAAATAGCCACAGCGCTTCCTGATGGCTCAGCAATGTCACCTTTGCTTACAATAGCAAATTCCTC
TGCCTCTGACTCTTCCAAGCAGTCCTCAAACAGACCTGCCCATAACATAAGCCATATTCTAGGTCATGAT
TGCAGTTCAGCTGTTTAA

Translation (2245 aa):
MPEMTENETPTKKQHRKKNRETHNAVERHRKKKINAGINRIGELIPCSPALKQSKNMILDQAFKYITELK
RQNDELLLNGGNNEQAEEIKKLRKQLEEIQKENGRYIELLKANDICLYDDPTIHWKGNLKNSKVSVVIPS
DQVQKKIIVYSNGNQPGGNSQGTAVQGITFNVSHNLQKQTANVVPVQRTCNLVTPVSISGVYPSENKPWH
QTTVPALATNQPVPLCLPAAISAQSILELPTSESESNVLGATSGSLIAVSIESEPHQHHSLHTCLNDQNS
SENKNGQENPKVLKKMTPCVTNIPHSSSATATKVHHGNKSCLSIQDFRGDFQNTFVVSVTTTVCSQPPRT
AGDSSPMSISKSADLTSTATVVASSAPGVGKATIPISTLSGNPLDNGWTLSCSLPSSSVSTSDLKNINSL
TRISSAGNTQTTWTTLQLAGNTIQPLSQTPSSAVTPVLNESGTSPTTSNHSRYVATDINLNNSFPADGQP
VEQVVVTLPSCPSLPMQPLIAQPQVKSQPPKNILPLNSAMQVIQMAQPVGSAVNSAPTNQNVIILQPPST
TPCPTVMRAEVSNQTVGQQIVIIQAANQNPLPLLPAPPPGSVRLPINGANTVIGSNNSVQNVPTPQTFGG
KHLVHILPRPSSLSASNSTQTFSVTMSNQQPQTISLNGQLFALQPVMSSSGTTNQTPMQIIQPTTSEDPN
TNVALNTFGALASLNQSISQMAGQSCVQLSISQPANSQTAANSQTTTANCVSLTTTAAPPVTTDSSATLA
STYNLVSTSSMNTVACLPNMKSKRLNKKPGGRKHLAANKSACPLNSVRDVSKLDCPNTEGSAEPPCNDGL
LESFPAVLPSVSVSQANSVSVSASHSLGVLSSESLIPESVSKSKSAEKSSPPSQESVTSEHFAMAAAKSK
DSTPNLQQETSQDKPPSSLALSDAAKPCASANVLIPSPSDPHILVSQVPGLSSTTSTTSTDCVSEVEIIA
EPCRVEQDSSDTMQTTGLLKGQGLTTLLSDLAKKKNPQKSSLSDQMDHPDFSSENPKIVDSSVNLHPKQE
LLLMNNDDRDPPQHHSCLPDQEVINGSLINGRQADSPMSTSSGSSRSFSVASMLPETTREDVTSNATTNT
CDSCTFVEQTDIVALAARAIFDQENLEKGRVGLQADIREVASKPSEASLLEGDPPFKSQIPKESGTGQAE
ATPNEFNSQGSIEATMERPLEKPSCSLGIKTSNASLQDSTSQPPSITSLSVNNLIHQSSISHPLASCAGL
SPTSEQTTVPATVNLTVSSSSYGSQPPGPSLMTEYSQEQLNTMTSTIPNSQIQEPLLKPSHESRKDSAKR
AVQDDLLLSSAKRQKHCQPAPLRLESMSLMSRTPDTISDQTQMMVSQIPPNSSNSVVPVSNPAHGDGLTR
LFPPSNNFVTPALRQTEVQCGSQPSVAEQQQTQASQHLQALQQHVPAQGVSHLHSNHLYIKQQQQQQQQQ
QQQQQQQQAGQLRERHHLYQMQHHVPHAESSVHSQPHNVHQQRTLQQEVQMQKKRNLVQGTQTSQLSLQP
KHHGTDQSRSKTGQPHPHHQQMQQQMQQHFGSSQTEKSCENPSTSRNHHNHPQNHLNQDIMHQQQDVGSR
QQGSGVSSEHVSGHNPMQRLLTSRGLEQQMVSQPSIVTRSSDMTCTPHRPERNRVSSYSAEALIGKTSSN
SEQRMGISIQGSRVSDQLEMRSYLDVPRNKSLAIHNMQGRVDHTVASDIRLSDCQTFKPSGASQQPQSNF
EVQSSRNNEIGNPVSSLRSMQSQAFRISQNTGPPPIDRQKRLSYPPVQSIPTGNGIPSRDSENTCHQSFM
QSLLAPHLSDQVIGSQRSLSEHQRNTQCGPSSAIEYNCPPTHENVHIRRESESQNRESCDMSLGAINTRN
STLNIPFSSSSSSGDIQGRNTSPNVSVQKSNPMRITESHATKGHMNPPVTTNMHGVARPALPHPSVSHGN
GDQGPAVRQANSSVPQRSRHPLQDSSGSKIRQPERNRSGNQRQSTVFDPSLPHLPLSTGGSMILGRQQPA
TEKRGSIVRFMPDSPQVPNDNSGPDQHTLSQNFGFSFIPEGGMNPPINANASFIPQVTQPSATRTPALIP
VDPQNTLPSFYPPYSPAHPTLSNDISIPYFPNQMFSNPSTEKVNSGSLNNRFGSILSPPRPVGFAQPSFP
LLPDMPPMHMTNSHLSNFNMTSLFPEIATALPDGSAMSPLLTIANSSASDSSKQSSNRPAHNISHILGHD
CSSAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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